Equivalence class NR_3.5_65061.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QZP|1|L5+ 6QZP|1|L8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA (3773-MER), 5.8S rRNA (156-MER) | Homo sapiens | Eukarya | RF02543 + RF00002 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2019-04-24 |
| 2 | 6EK0|1|L5+ 6EK0|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2018-01-24 |
| 3 | 6OLE|1|t+ 6OLE|1|D | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 4 | 6OM0|1|t+ 6OM0|1|D | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 2019-06-19 |
| 5 | 6OLI|1|t+ 6OLI|1|D | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | Electron microscopy | 3.5 | 2019-06-19 |
| 6 | 6OLG|1|A2+ 6OLG|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | Electron microscopy | 3.4 | 2019-06-19 |
| 7 | 5AJ0|1|A2+ 5AJ0|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo electron microscopy of actively translating human polysomes (POST state). | Electron microscopy | 3.5 | 2015-05-20 |
Release history
| Release | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_65061.1 | NR_3.5_91467.8 | 3.79 | (3) 5AJ0|1|A2+5AJ0|1|A3, 6EK0|1|L5+6EK0|1|L8, 6QZP|1|L5+6QZP|1|L8 | (4) 6OLE|1|t+6OLE|1|D, 6OLG|1|A2+6OLG|1|A3, 6OLI|1|t+6OLI|1|D, 6OM0|1|t+6OM0|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_65061.1 | NR_3.5_65061.2 | 3.114 | (7) 5AJ0|1|A2+5AJ0|1|A3, 6EK0|1|L5+6EK0|1|L8, 6OLE|1|t+6OLE|1|D, 6OLG|1|A2+6OLG|1|A3, 6OLI|1|t+6OLI|1|D, 6OM0|1|t+6OM0|1|D, 6QZP|1|L5+6QZP|1|L8 | (0) | (1) 6SXO|1|L5 |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5AJ0|1|A2+ 5AJ0|1|A3 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 3612 | |
| 2 | 6OLG|1|A2+ 6OLG|1|A3 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 3612 | |
| 3 | 6OLI|1|t+ 6OLI|1|D | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 3607 | |
| 4 | 6OLE|1|t+ 6OLE|1|D | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 3607 | |
| 5 | 6OM0|1|t+ 6OM0|1|D | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 3607 | |
| 6 | 6QZP|1|L5+ 6QZP|1|L8 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 3696 | |
| 7 | 6EK0|1|L5+ 6EK0|1|L8 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 3672 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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