Equivalence class NR_3.5_65061.22 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8GLP|1|L5+ 8GLP|1|L8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | Electron microscopy | 1.67 | 3702 | 2023-04-19 |
| 2 | 8A3D|1|A+ 8A3D|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound | Electron microscopy | 1.67 | 3451 | 2023-03-08 |
| 3 | 8G5Y|1|L5+ 8G5Y|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | Electron microscopy | 2.29 | 3877 | 2023-04-19 |
| 4 | 7XNY|1|L1+ 7XNY|1|L3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | Electron microscopy | 2.5 | 3929 | 2023-04-05 |
| 5 | 6ZMI|1|L5+ 6ZMI|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | Electron microscopy | 2.6 | 3929 | 2020-08-19 |
| 6 | 7OW7|1|A+ 7OW7|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | EIF6-bound large subunit of the human ribosome | Electron microscopy | 2.2 | 3451 | 2022-10-05 |
| 7 | 6ZM7|1|L5+ 6ZM7|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | Electron microscopy | 2.7 | 3929 | 2020-07-29 |
| 8 | 8G60|1|L5+ 8G60|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | Electron microscopy | 2.54 | 3793 | 2023-04-19 |
| 9 | 7XNX|1|L1+ 7XNX|1|L3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells | Electron microscopy | 2.7 | 3929 | 2023-04-05 |
| 10 | 8G5Z|1|L5+ 8G5Z|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | Electron microscopy | 2.64 | 3843 | 2023-04-19 |
| 11 | 7F5S|1|L5+ 7F5S|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human delta-METTL18 60S ribosome | Electron microscopy | 2.72 | 3871 | 2022-06-22 |
| 12 | 8FL3|1|L3+ 8FL3|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State I2) | Electron microscopy | 2.53 | 3648 | 2023-07-12 |
| 13 | 6Y6X|1|L5+ 6Y6X|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Tetracenomycin X bound to the human ribosome | Electron microscopy | 2.8 | 3929 | 2020-07-08 |
| 14 | 6Z6N|1|L5+ 6Z6N|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | Electron microscopy | 2.9 | 3928 | 2020-07-29 |
| 15 | 8FLE|1|L3+ 8FLE|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State L2) | Electron microscopy | 2.48 | 3526 | 2023-07-12 |
| 16 | 8FLB|1|L3+ 8FLB|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State K2) | Electron microscopy | 2.55 | 3574 | 2023-07-12 |
| 17 | 8FL7|1|L3+ 8FL7|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State J2) | Electron microscopy | 2.55 | 3563 | 2023-07-12 |
| 18 | 8G6J|1|L5+ 8G6J|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) | Electron microscopy | 2.8 | 3843 | 2023-04-19 |
| 19 | 6QZP|1|L5+ 6QZP|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA (3773-MER), 5.8S rRNA (156-MER) | Homo sapiens | Eukarya | RF02543 + RF00002 | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 3929 | 2019-04-24 |
| 20 | 6ZME|1|L5+ 6ZME|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | Electron microscopy | 3 | 3929 | 2020-08-12 |
| 21 | 6Z6L|1|L5+ 6Z6L|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | Electron microscopy | 3 | 3928 | 2020-07-29 |
| 22 | 7QVP|1|L5+ 7QVP|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 3767 | 2022-10-12 |
| 23 | 8FLD|1|L3+ 8FLD|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State L1) | Electron microscopy | 2.58 | 3526 | 2023-07-12 |
| 24 | 8FL6|1|L3+ 8FL6|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State J1) | Electron microscopy | 2.62 | 3559 | 2023-07-12 |
| 25 | 8FLA|1|L3+ 8FLA|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State K1) | Electron microscopy | 2.63 | 3574 | 2023-07-12 |
| 26 | 8FL2|1|L3+ 8FL2|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State I1) | Electron microscopy | 2.67 | 3649 | 2023-07-12 |
| 27 | 7QVP|1|L6+ 7QVP|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | Electron microscopy | 3 | 3728 | 2022-10-12 |
| 28 | 8IDT|1|2+ 8IDT|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State G | Electron microscopy | 2.8 | 3680 | 2023-08-09 |
| 29 | 6XA1|1|L5+ 6XA1|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of a drug-like compound stalled human translation termination complex | Electron microscopy | 2.8 | 3665 | 2020-10-07 |
| 30 | 6ZMO|1|L5+ 6ZMO|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | Electron microscopy | 3.1 | 3929 | 2020-08-19 |
| 31 | 6Z6M|1|L5+ 6Z6M|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | Electron microscopy | 3.1 | 3928 | 2020-07-29 |
| 32 | 8FLF|1|L3+ 8FLF|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State L3) | Electron microscopy | 2.65 | 3479 | 2023-07-12 |
| 33 | 8G61|1|L5+ 8G61|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | Electron microscopy | 2.94 | 3813 | 2023-04-19 |
| 34 | 8INF|1|2+ 8INF|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State F' | Electron microscopy | 3 | 3808 | 2023-08-09 |
| 35 | 8IDY|1|2+ 8IDY|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State F | Electron microscopy | 3 | 3797 | 2023-08-09 |
| 36 | 8FL9|1|L3+ 8FL9|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State J3) | Electron microscopy | 2.75 | 3515 | 2023-07-12 |
| 37 | 8FLC|1|L3+ 8FLC|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State K3) | Electron microscopy | 2.76 | 3527 | 2023-07-12 |
| 38 | 6OLE|1|t+ 6OLE|1|D | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 3764 | 2019-06-19 |
| 39 | 6OM0|1|t+ 6OM0|1|D | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | Electron microscopy | 3.1 | 3764 | 2019-06-19 |
| 40 | 6Y2L|1|L5+ 6Y2L|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of human ribosome in POST state | Electron microscopy | 3 | 3769 | 2020-04-15 |
| 41 | 8FL4|1|L3+ 8FL4|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nuclear pre-60S ribosomal subunit (State I3) | Electron microscopy | 2.89 | 3640 | 2023-07-12 |
| 42 | 6LQM|1|2+ 6LQM|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a pre-60S ribosomal subunit - state C | Electron microscopy | 3.09 | 3688 | 2020-08-26 |
| 43 | 6Y0G|1|L5+ 6Y0G|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of human ribosome in classical-PRE state | Electron microscopy | 3.2 | 3800 | 2020-04-15 |
| 44 | 7BHP|1|L5+ 7BHP|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the human Ebp1 - 80S ribosome | Electron microscopy | 3.3 | 3800 | 2021-02-03 |
| 45 | 6LU8|1|2+ 6LU8|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a human pre-60S ribosomal subunit - state A | Electron microscopy | 3.13 | 3633 | 2020-08-26 |
| 46 | 6LSR|1|2+ 6LSR|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a pre-60S ribosomal subunit - state B | Electron microscopy | 3.13 | 3637 | 2020-08-26 |
| 47 | 8INE|1|2+ 8INE|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State G' | Electron microscopy | 3.2 | 3692 | 2023-08-09 |
| 48 | 8INK|1|2+ 8INK|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State D | Electron microscopy | 3.2 | 3651 | 2023-08-09 |
| 49 | 8IPY|1|2+ 8IPY|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State D' | Electron microscopy | 3.2 | 3641 | 2023-08-09 |
| 50 | 8IPD|1|2+ 8IPD|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State C | Electron microscopy | 3.2 | 3641 | 2023-08-09 |
| 51 | 6LSS|1|2+ 6LSS|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a pre-60S ribosomal subunit - state preA | Electron microscopy | 3.23 | 3630 | 2020-08-26 |
| 52 | 8IE3|1|2+ 8IE3|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State E | Electron microscopy | 3.3 | 3675 | 2023-08-09 |
| 53 | 8FKY|1|L3+ 8FKY|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State F) | Electron microscopy | 2.67 | 2740 | 2023-07-12 |
| 54 | 6OLI|1|t+ 6OLI|1|D | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | Electron microscopy | 3.5 | 3764 | 2019-06-19 |
| 55 | 6OLG|1|A2+ 6OLG|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | Electron microscopy | 3.4 | 3769 | 2019-06-19 |
| 56 | 8FKW|1|L3+ 8FKW|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State D2) | Electron microscopy | 2.5 | 2429 | 2023-07-12 |
| 57 | 8IR1|1|2+ 8IR1|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRMA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State A | Electron microscopy | 3.3 | 3524 | 2023-08-09 |
| 58 | 8FKV|1|L3+ 8FKV|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State D1) | Electron microscopy | 2.47 | 2365 | 2023-07-12 |
| 59 | 8IR3|1|2+ 8IR3|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | human nuclear pre-60S ribosomal particle - State B' | Electron microscopy | 3.5 | 3696 | 2023-08-09 |
| 60 | 6Y57|1|L5+ 6Y57|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure of human ribosome in hybrid-PRE state | Electron microscopy | 3.5 | 3730 | 2020-04-15 |
| 61 | 8FKX|1|L3+ 8FKX|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State E) | Electron microscopy | 2.59 | 2402 | 2023-07-12 |
| 62 | 8FKZ|1|L3+ 8FKZ|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State G) | Electron microscopy | 3.04 | 2987 | 2023-07-12 |
| 63 | 8FKU|1|L3+ 8FKU|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State C2) | Electron microscopy | 2.82 | 2337 | 2023-07-12 |
| 64 | 8FKT|1|L3+ 8FKT|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State C1) | Electron microscopy | 2.81 | 2277 | 2023-07-12 |
| 65 | 8BF9|1|5 | Large subunit ribosomal RNA | RNA (1766) | Ovis aries | Eukarya | RF02543 | Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. | Electron microscopy | 2.69 | 1766 | 2023-11-01 |
| 66 | 5AJ0|1|A2+ 5AJ0|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo electron microscopy of actively translating human polysomes (POST state). | Electron microscopy | 3.5 | 3769 | 2015-05-20 |
| 67 | 8FKS|1|L3+ 8FKS|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State B2) | Electron microscopy | 2.88 | 1976 | 2023-07-12 |
| 68 | 8FKR|1|L3+ 8FKR|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State B1) | Electron microscopy | 2.89 | 1921 | 2023-07-12 |
| 69 | 8FKQ|1|L3+ 8FKQ|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State A2) | Electron microscopy | 2.76 | 1715 | 2023-07-12 |
| 70 | 8FKP|1|L3+ 8FKP|1|L1 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Human nucleolar pre-60S ribosomal subunit (State A1) | Electron microscopy | 2.85 | 1659 | 2023-07-12 |
| 71 | 8FL0|1|L3 | Large subunit ribosomal RNA | 28S rRNA | Homo sapiens | Eukarya | RF02543 | Human nucleolar pre-60S ribosomal subunit (State H) | Electron microscopy | 2.91 | 1558 | 2023-07-12 |
| 72 | 6SXO|1|L5 | Large subunit ribosomal RNA | 28S ribosomal RNA including ES27L-B (2839-3265) | Homo sapiens | Eukarya | RF02543 | Cryo-EM structure of the human Ebp1-ribosome complex | Electron microscopy | 3.3 | 268 | 2020-02-19 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6SXO|1|L5 | Cryo-EM structure of the human Ebp1-ribosome complex | ELECTRON MICROSCOPY | 3.3 | 268 | |
| 2 | 6LSR|1|2+ 6LSR|1|8 | Cryo-EM structure of a pre-60S ribosomal subunit - state B | ELECTRON MICROSCOPY | 3.13 | 3637 | |
| 3 | 7OW7|1|A+ 7OW7|1|C | EIF6-bound large subunit of the human ribosome | ELECTRON MICROSCOPY | 2.2 | 3451 | |
| 4 | 8A3D|1|A+ 8A3D|1|C | Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound | ELECTRON MICROSCOPY | 1.67 | 3451 | |
| 5 | 8G60|1|L5+ 8G60|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state) | ELECTRON MICROSCOPY | 2.54 | 3793 | |
| 6 | 5AJ0|1|A2+ 5AJ0|1|A3 | Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 3769 | |
| 7 | 6OLG|1|A2+ 6OLG|1|A3 | Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) | ELECTRON MICROSCOPY | 3.4 | 3769 | |
| 8 | 6OLI|1|t+ 6OLI|1|D | Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC) | ELECTRON MICROSCOPY | 3.5 | 3764 | |
| 9 | 6OLE|1|t+ 6OLE|1|D | Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 3764 | |
| 10 | 6OM0|1|t+ 6OM0|1|D | Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs | ELECTRON MICROSCOPY | 3.1 | 3764 | |
| 11 | 8G5Y|1|L5+ 8G5Y|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state) | ELECTRON MICROSCOPY | 2.29 | 3877 | |
| 12 | 8GLP|1|L5+ 8GLP|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure) | ELECTRON MICROSCOPY | 1.67 | 3702 | |
| 13 | 8G61|1|L5+ 8G61|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state) | ELECTRON MICROSCOPY | 2.94 | 3813 | |
| 14 | 8G5Z|1|L5+ 8G5Z|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state) | ELECTRON MICROSCOPY | 2.64 | 3843 | |
| 15 | 8G6J|1|L5+ 8G6J|1|L8 | mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2) | ELECTRON MICROSCOPY | 2.8 | 3843 | |
| 16 | 6XA1|1|L5+ 6XA1|1|L8 | Structure of a drug-like compound stalled human translation termination complex | ELECTRON MICROSCOPY | 2.8 | 3665 | |
| 17 | 7F5S|1|L5+ 7F5S|1|L8 | human delta-METTL18 60S ribosome | ELECTRON MICROSCOPY | 2.72 | 3871 | |
| 18 | 7BHP|1|L5+ 7BHP|1|L8 | Cryo-EM structure of the human Ebp1 - 80S ribosome | ELECTRON MICROSCOPY | 3.3 | 3800 | |
| 19 | 7QVP|1|L5+ 7QVP|1|L8 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 3767 | |
| 20 | 6Y2L|1|L5+ 6Y2L|1|L8 | Structure of human ribosome in POST state | ELECTRON MICROSCOPY | 3 | 3769 | |
| 21 | 6Y0G|1|L5+ 6Y0G|1|L8 | Structure of human ribosome in classical-PRE state | ELECTRON MICROSCOPY | 3.2 | 3800 | |
| 22 | 7QVP|1|L6+ 7QVP|1|L1 | Human collided disome (di-ribosome) stalled on XBP1 mRNA | ELECTRON MICROSCOPY | 3 | 3728 | |
| 23 | 6Y57|1|L5+ 6Y57|1|L8 | Structure of human ribosome in hybrid-PRE state | ELECTRON MICROSCOPY | 3.5 | 3730 | |
| 24 | 6QZP|1|L5+ 6QZP|1|L8 | High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 3929 | |
| 25 | 7XNX|1|L1+ 7XNX|1|L3 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells | ELECTRON MICROSCOPY | 2.7 | 3929 | |
| 26 | 7XNY|1|L1+ 7XNY|1|L3 | High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells | ELECTRON MICROSCOPY | 2.5 | 3929 | |
| 27 | 6Z6M|1|L5+ 6Z6M|1|L8 | Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 | ELECTRON MICROSCOPY | 3.1 | 3928 | |
| 28 | 6ZME|1|L5+ 6ZME|1|L8 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex | ELECTRON MICROSCOPY | 3 | 3929 | |
| 29 | 6ZMO|1|L5+ 6ZMO|1|L8 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complex | ELECTRON MICROSCOPY | 3.1 | 3929 | |
| 30 | 6ZMI|1|L5+ 6ZMI|1|L8 | SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complex | ELECTRON MICROSCOPY | 2.6 | 3929 | |
| 31 | 6ZM7|1|L5+ 6ZM7|1|L8 | SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex | ELECTRON MICROSCOPY | 2.7 | 3929 | |
| 32 | 6Y6X|1|L5+ 6Y6X|1|L8 | Tetracenomycin X bound to the human ribosome | ELECTRON MICROSCOPY | 2.8 | 3929 | |
| 33 | 6Z6N|1|L5+ 6Z6N|1|L8 | Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) | ELECTRON MICROSCOPY | 2.9 | 3928 | |
| 34 | 6Z6L|1|L5+ 6Z6L|1|L8 | Cryo-EM structure of human CCDC124 bound to 80S ribosomes | ELECTRON MICROSCOPY | 3 | 3928 | |
| 35 | 6LQM|1|2+ 6LQM|1|8 | Cryo-EM structure of a pre-60S ribosomal subunit - state C | ELECTRON MICROSCOPY | 3.09 | 3688 | |
| 36 | 8FLF|1|L3+ 8FLF|1|L1 | Human nuclear pre-60S ribosomal subunit (State L3) | ELECTRON MICROSCOPY | 2.65 | 3479 | |
| 37 | 8FLE|1|L3+ 8FLE|1|L1 | Human nuclear pre-60S ribosomal subunit (State L2) | ELECTRON MICROSCOPY | 2.48 | 3526 | |
| 38 | 8FLD|1|L3+ 8FLD|1|L1 | Human nuclear pre-60S ribosomal subunit (State L1) | ELECTRON MICROSCOPY | 2.58 | 3526 | |
| 39 | 8FL6|1|L3+ 8FL6|1|L1 | Human nuclear pre-60S ribosomal subunit (State J1) | ELECTRON MICROSCOPY | 2.62 | 3559 | |
| 40 | 8FL7|1|L3+ 8FL7|1|L1 | Human nuclear pre-60S ribosomal subunit (State J2) | ELECTRON MICROSCOPY | 2.55 | 3563 | |
| 41 | 8FLB|1|L3+ 8FLB|1|L1 | Human nuclear pre-60S ribosomal subunit (State K2) | ELECTRON MICROSCOPY | 2.55 | 3574 | |
| 42 | 8FLA|1|L3+ 8FLA|1|L1 | Human nuclear pre-60S ribosomal subunit (State K1) | ELECTRON MICROSCOPY | 2.63 | 3574 | |
| 43 | 8FLC|1|L3+ 8FLC|1|L1 | Human nuclear pre-60S ribosomal subunit (State K3) | ELECTRON MICROSCOPY | 2.76 | 3527 | |
| 44 | 8FL9|1|L3+ 8FL9|1|L1 | Human nuclear pre-60S ribosomal subunit (State J3) | ELECTRON MICROSCOPY | 2.75 | 3515 | |
| 45 | 8INE|1|2+ 8INE|1|8 | human nuclear pre-60S ribosomal particle - State G' | ELECTRON MICROSCOPY | 3.2 | 3692 | |
| 46 | 8INF|1|2+ 8INF|1|8 | human nuclear pre-60S ribosomal particle - State F' | ELECTRON MICROSCOPY | 3 | 3808 | |
| 47 | 8IDY|1|2+ 8IDY|1|8 | human nuclear pre-60S ribosomal particle - State F | ELECTRON MICROSCOPY | 3 | 3797 | |
| 48 | 8IDT|1|2+ 8IDT|1|8 | human nuclear pre-60S ribosomal particle - State G | ELECTRON MICROSCOPY | 2.8 | 3680 | |
| 49 | 6LSS|1|2+ 6LSS|1|8 | Cryo-EM structure of a pre-60S ribosomal subunit - state preA | ELECTRON MICROSCOPY | 3.23 | 3630 | |
| 50 | 6LU8|1|2+ 6LU8|1|8 | Cryo-EM structure of a human pre-60S ribosomal subunit - state A | ELECTRON MICROSCOPY | 3.13 | 3633 | |
| 51 | 8IE3|1|2+ 8IE3|1|8 | human nuclear pre-60S ribosomal particle - State E | ELECTRON MICROSCOPY | 3.3 | 3675 | |
| 52 | 8IPD|1|2+ 8IPD|1|8 | human nuclear pre-60S ribosomal particle - State C | ELECTRON MICROSCOPY | 3.2 | 3641 | |
| 53 | 8INK|1|2+ 8INK|1|8 | human nuclear pre-60S ribosomal particle - State D | ELECTRON MICROSCOPY | 3.2 | 3651 | |
| 54 | 8IPY|1|2+ 8IPY|1|8 | human nuclear pre-60S ribosomal particle - State D' | ELECTRON MICROSCOPY | 3.2 | 3641 | |
| 55 | 8FL4|1|L3+ 8FL4|1|L1 | Human nuclear pre-60S ribosomal subunit (State I3) | ELECTRON MICROSCOPY | 2.89 | 3640 | |
| 56 | 8FL3|1|L3+ 8FL3|1|L1 | Human nuclear pre-60S ribosomal subunit (State I2) | ELECTRON MICROSCOPY | 2.53 | 3648 | |
| 57 | 8FL2|1|L3+ 8FL2|1|L1 | Human nuclear pre-60S ribosomal subunit (State I1) | ELECTRON MICROSCOPY | 2.67 | 3649 | |
| 58 | 8FKZ|1|L3+ 8FKZ|1|L1 | Human nucleolar pre-60S ribosomal subunit (State G) | ELECTRON MICROSCOPY | 3.04 | 2987 | |
| 59 | 8IR1|1|2+ 8IR1|1|8 | human nuclear pre-60S ribosomal particle - State A | ELECTRON MICROSCOPY | 3.3 | 3524 | |
| 60 | 8IR3|1|2+ 8IR3|1|8 | human nuclear pre-60S ribosomal particle - State B' | ELECTRON MICROSCOPY | 3.5 | 3696 | |
| 61 | 8FKY|1|L3+ 8FKY|1|L1 | Human nucleolar pre-60S ribosomal subunit (State F) | ELECTRON MICROSCOPY | 2.67 | 2740 | |
| 62 | 8FKX|1|L3+ 8FKX|1|L1 | Human nucleolar pre-60S ribosomal subunit (State E) | ELECTRON MICROSCOPY | 2.59 | 2402 | |
| 63 | 8FKU|1|L3+ 8FKU|1|L1 | Human nucleolar pre-60S ribosomal subunit (State C2) | ELECTRON MICROSCOPY | 2.82 | 2337 | |
| 64 | 8FKW|1|L3+ 8FKW|1|L1 | Human nucleolar pre-60S ribosomal subunit (State D2) | ELECTRON MICROSCOPY | 2.5 | 2429 | |
| 65 | 8FKV|1|L3+ 8FKV|1|L1 | Human nucleolar pre-60S ribosomal subunit (State D1) | ELECTRON MICROSCOPY | 2.47 | 2365 | |
| 66 | 8FKT|1|L3+ 8FKT|1|L1 | Human nucleolar pre-60S ribosomal subunit (State C1) | ELECTRON MICROSCOPY | 2.81 | 2277 | |
| 67 | 8FL0|1|L3 | Human nucleolar pre-60S ribosomal subunit (State H) | ELECTRON MICROSCOPY | 2.91 | 1558 | |
| 68 | 8FKS|1|L3+ 8FKS|1|L1 | Human nucleolar pre-60S ribosomal subunit (State B2) | ELECTRON MICROSCOPY | 2.88 | 1976 | |
| 69 | 8FKQ|1|L3+ 8FKQ|1|L1 | Human nucleolar pre-60S ribosomal subunit (State A2) | ELECTRON MICROSCOPY | 2.76 | 1715 | |
| 70 | 8FKP|1|L3+ 8FKP|1|L1 | Human nucleolar pre-60S ribosomal subunit (State A1) | ELECTRON MICROSCOPY | 2.85 | 1659 | |
| 71 | 8FKR|1|L3+ 8FKR|1|L1 | Human nucleolar pre-60S ribosomal subunit (State B1) | ELECTRON MICROSCOPY | 2.89 | 1921 | |
| 72 | 8BF9|1|5 | Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. | ELECTRON MICROSCOPY | 2.69 | 1766 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: