#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13PEY|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 bound to RNA and ADP BeF3X-ray diffraction1.42011-03-23
23PF5|1|Rhexaribouracil (rU6)Crystal structure of Bs-CspB in complex with rU6X-ray diffraction1.682011-09-21
35ELX|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')Saccharomyces cerevisiaeS. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3X-ray diffraction1.812016-02-24
43PEW|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-ray diffraction1.52011-03-23
54ALP|1|EHEXA URIDINEsynthetic constructThe Lin28b Cold shock domain in complex with hexauridineX-ray diffraction1.482012-09-05
62HYI|1|F5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-ray diffraction2.32006-08-15
73EX7|1|FRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-ray diffraction2.32008-12-09
83EX7|1|JRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-ray diffraction2.32008-12-09
92HYI|1|L5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-ray diffraction2.32006-08-15
104Y91|1|NRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')synthetic constructCrystal Structure of a Thermotoga maritima Hfq homologX-ray diffraction2.662016-03-16
114Y91|1|ORNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')synthetic constructCrystal Structure of a Thermotoga maritima Hfq homologX-ray diffraction2.662016-03-16
124NL3|1|R5'-R(*UP*UP*UP*UP*UP*U)-3'Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-ray diffraction3.12014-09-10
134NL3|1|Z5'-R(*UP*UP*UP*UP*UP*U)-3'Crystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-ray diffraction3.12014-09-10
143O8R|1|CRNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-ray diffraction2.32011-01-05
153O8C|1|CRNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-ray diffraction22011-01-05
165BTE|1|CRNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')Homo sapiensCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-ray diffraction2.42015-07-22
175BTE|1|DRNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')Homo sapiensCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-ray diffraction2.42015-07-22
183PF5|1|Shexaribouracil (rU6)Crystal structure of Bs-CspB in complex with rU6X-ray diffraction1.682011-09-21

Release history

Release2.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.122
Date2016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_74924.3NR_all_74924.22.67(16) 2HYI|1|F, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3O8C|1|C, 3O8R|1|C, 3PEW|1|B, 3PEY|1|B, 3PF5|1|R, 3PF5|1|S, 4ALP|1|E, 4NL3|1|R, 4NL3|1|Z, 5BTE|1|C, 5BTE|1|D, 5ELX|1|B(2) 4Y91|1|N, 4Y91|1|O(1) 1N34|1|Z

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_74924.3NR_3.5_74924.42.123(18) 2HYI|1|F, 2HYI|1|L, 3EX7|1|F, 3EX7|1|J, 3O8C|1|C, 3O8R|1|C, 3PEW|1|B, 3PEY|1|B, 3PF5|1|R, 3PF5|1|S, 4ALP|1|E, 4NL3|1|R, 4NL3|1|Z, 4Y91|1|N, 4Y91|1|O, 5BTE|1|C, 5BTE|1|D, 5ELX|1|B(0) (1) 5SZE|1|C

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13O8R|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION2.35
23O8C|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION25
33PF5|1|SCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.681
42HYI|1|FStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
53EX7|1|JThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
62HYI|1|LStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
73EX7|1|FThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
83PEY|1|BS. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.46
95ELX|1|BS. cerevisiae Dbp5 bound to RNA and mant-ADP BeF3X-RAY DIFFRACTION1.816
103PEW|1|BS. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.56
115BTE|1|CCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
125BTE|1|DCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
133PF5|1|RCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.689
144NL3|1|ZCrystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-RAY DIFFRACTION3.16
154NL3|1|RCrystal Structure of Listeria monocytogenes Hfq in complex with U6 RNAX-RAY DIFFRACTION3.16
164Y91|1|OCrystal Structure of a Thermotoga maritima Hfq homologX-RAY DIFFRACTION2.666
174Y91|1|NCrystal Structure of a Thermotoga maritima Hfq homologX-RAY DIFFRACTION2.666
184ALP|1|EThe Lin28b Cold shock domain in complex with hexauridineX-RAY DIFFRACTION1.486

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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