Equivalence class NR_3.5_79924.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4OQ9|1|s (rep) | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 2 | 3I62|1|B | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and ADP-Aluminum Fluoride | X-ray diffraction | 1.95 | 2009-09-08 | ||||
| 3 | 3I61|1|B | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and ADP-Beryllium Fluoride | X-ray diffraction | 2.1 | 2009-09-08 | ||||
| 4 | 3I5X|1|B | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA and AMP-PNP | X-ray diffraction | 1.9 | 2009-09-08 | ||||
| 5 | 4OQ9|1|f | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 6 | 4NIA|1|f | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 7 | 4OQ9|1|j | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 8 | 4NIA|1|j | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 9 | 4OQ9|1|k | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 10 | 4NIA|1|k | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 11 | 4OQ9|1|l | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 12 | 4NIA|1|l | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 13 | 4OQ9|1|o | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 14 | 4NIA|1|o | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 15 | 4NIA|1|p | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 16 | 4OQ9|1|p | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 17 | 4OQ9|1|q | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 18 | 4NIA|1|q | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 19 | 4OQ9|1|r | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | |||
| 20 | 4NIA|1|r | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 21 | 4NIA|1|s | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Tobacco virtovirus 1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | |||
| 22 | 3I5Y|1|B | 5'-R(*UP*UP*UP*(5BU)P*UP*UP*UP*UP*UP*U)-3' | Structure of Mss116p bound to ssRNA containing a single 5-BrU and AMP-PNP | X-ray diffraction | 2.49 | 2009-09-08 | ||||
| 23 | 3SQX|1|B | RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Structure of Mss116p (NTE and C-tail double deletion) bound to ssRNA and AMP-PNP | X-ray diffraction | 2.11 | 2011-10-12 | ||||
| 24 | 3SQW|1|B | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Structure of Mss116p (NTE deletion) bound to ssRNA and AMP-PNP | X-ray diffraction | 1.91 | 2011-10-12 | ||||
| 25 | 2DB3|1|E | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-ray diffraction | 2.2 | 2006-05-02 | ||||
| 26 | 2DB3|1|F | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-ray diffraction | 2.2 | 2006-05-02 | ||||
| 27 | 2DB3|1|G | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-ray diffraction | 2.2 | 2006-05-02 | ||||
| 28 | 3FHT|1|C | RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Crystal structure of human Dbp5 in complex with AMPPNP and RNA | X-ray diffraction | 2.2 | 2009-02-17 | ||||
| 29 | 3FHT|1|D | RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | Crystal structure of human Dbp5 in complex with AMPPNP and RNA | X-ray diffraction | 2.2 | 2009-02-17 | ||||
| 30 | 2DB3|1|H | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-ray diffraction | 2.2 | 2006-05-02 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3I5Y|1|B | Structure of Mss116p bound to ssRNA containing a single 5-BrU and AMP-PNP | X-RAY DIFFRACTION | 2.49 | 9 | |
| 2 | 3I62|1|B | Structure of Mss116p bound to ssRNA and ADP-Aluminum Fluoride | X-RAY DIFFRACTION | 1.95 | 10 | |
| 3 | 3I61|1|B | Structure of Mss116p bound to ssRNA and ADP-Beryllium Fluoride | X-RAY DIFFRACTION | 2.1 | 10 | |
| 4 | 3I5X|1|B | Structure of Mss116p bound to ssRNA and AMP-PNP | X-RAY DIFFRACTION | 1.9 | 10 | |
| 5 | 4OQ9|1|k | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 6 | 4OQ9|1|f | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 7 | 4OQ9|1|o | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 8 | 4OQ9|1|r | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 9 | 4OQ9|1|l | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 10 | 4OQ9|1|j | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 11 | 4OQ9|1|p | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 12 | 4OQ9|1|q | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 13 | 4OQ9|1|s | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 10 | |
| 14 | 4NIA|1|p | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 15 | 4NIA|1|k | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 16 | 4NIA|1|j | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 17 | 4NIA|1|f | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 18 | 4NIA|1|l | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 19 | 4NIA|1|r | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 20 | 4NIA|1|s | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 21 | 4NIA|1|o | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 22 | 4NIA|1|q | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 10 | |
| 23 | 3SQX|1|B | Structure of Mss116p (NTE and C-tail double deletion) bound to ssRNA and AMP-PNP | X-RAY DIFFRACTION | 2.11 | 8 | |
| 24 | 3SQW|1|B | Structure of Mss116p (NTE deletion) bound to ssRNA and AMP-PNP | X-RAY DIFFRACTION | 1.91 | 8 | |
| 25 | 2DB3|1|F | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-RAY DIFFRACTION | 2.2 | 7 | |
| 26 | 2DB3|1|G | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-RAY DIFFRACTION | 2.2 | 7 | |
| 27 | 2DB3|1|E | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-RAY DIFFRACTION | 2.2 | 7 | |
| 28 | 2DB3|1|H | Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa | X-RAY DIFFRACTION | 2.2 | 6 | |
| 29 | 3FHT|1|D | Crystal structure of human Dbp5 in complex with AMPPNP and RNA | X-RAY DIFFRACTION | 2.2 | 6 | |
| 30 | 3FHT|1|C | Crystal structure of human Dbp5 in complex with AMPPNP and RNA | X-RAY DIFFRACTION | 2.2 | 6 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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