NR_3.5_83717.58

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|DA (rep)	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	5J8A\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
3	5JC9\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
4	4YBB\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
5	5IT8\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
6	4WOI\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
7	4WOI\|1\|CA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
8	6I7V\|1\|DA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	2018-12-05
9	5J91\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
10	4V9P\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
11	5J88\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
12	4V9P\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
13	4V9P\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
14	4V9P\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
15	6LKQ\|1\|t	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin	X-ray diffraction	3.1	2020-05-06
16	4V9D\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
17	4V9O\|1\|AA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
18	4V9O\|1\|EA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
19	4WWW\|1\|RA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
20	4V9O\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
21	4V6C\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
22	5J7L\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
23	4V7T\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
24	4U27\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
25	4WF1\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
26	5J8A\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
27	5JC9\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
28	4V7U\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
29	4V7V\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
30	4V52\|1\|DB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
31	4U24\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
32	4U25\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
33	4V9D\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
34	4U26\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
35	4V7S\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
36	4V57\|1\|DB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
37	4V52\|1\|BB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
38	4V57\|1\|BB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
39	4V9O\|1\|GA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
40	4U1U\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
41	4V85\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-ray diffraction	3.2	2014-07-09
42	4V54\|1\|DB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
43	4V64\|1\|DB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
44	4V50\|1\|DB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
45	4V54\|1\|BB	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
46	4V64\|1\|BB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
47	4V50\|1\|BB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
48	4YBB\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
49	4U1V\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
50	5J88\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
51	4V9C\|1\|DA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
52	4U20\|1\|BA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
53	6I7V\|1\|CA	Large subunit ribosomal RNA	23S ribsomal RNA	Escherichia coli	Bacteria	RF02541	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	2018-12-05
54	4U27\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
55	4V4Q\|1\|DB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
56	4V4Q\|1\|BB	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
57	4U25\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
58	4U1U\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
59	4V9C\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
60	4U1V\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
61	5IT8\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
62	4WF1\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
63	4U24\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
64	4U26\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
65	4U20\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
66	4V6C\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
67	5J91\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
68	4WWW\|1\|YA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
69	4V7T\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
70	4V7V\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
71	4V7S\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
72	4V7U\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
73	5J5B\|1\|DA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
74	4V4H\|1\|DB	Large subunit ribosomal RNA	23S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
75	4V4H\|1\|BB	Large subunit ribosomal RNA	23S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF02541	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
76	5J5B\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
77	6HRM\|1\|1	Small subunit ribosomal RNA	stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA	Escherichia coli	Bacteria	RF00177	E. coli 70S d2d8 stapled ribosome	Electron microscopy	2.96	2018-12-19
78	6PJ6\|1\|I	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	2020-01-22
79	6TBV\|1\|23S1	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	Electron microscopy	2.7	2020-01-01
80	6TC3\|1\|23S1	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	Electron microscopy	2.7	2020-01-01
81	6QDW\|1\|b	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide	Electron microscopy	2.83	2020-01-15
82	5AFI\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
83	6U48\|1\|CA	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	E. coli 50S with phazolicin (PHZ) bound in exit tunnel	Electron microscopy	2.87	2019-09-18
84	5NWY\|1\|N	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
85	5H5U\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Mechanistic insights into the alternative translation termination by ArfA and RF2	Electron microscopy	3.01	2017-01-25
86	6ORE\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Release complex 70S	Electron microscopy	2.9	2019-06-19
87	5MDV\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
88	6H4N\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	Electron microscopy	3	2018-09-05
89	5MDW\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.06	2016-12-14
90	6SZS\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis	Electron microscopy	3.06	2019-12-04
91	5MGP\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	Electron microscopy	3.1	2016-12-14
92	5MDZ\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome (empty A site)	Electron microscopy	3.1	2016-12-14
93	6S0K\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA, tRNA-CCA	Escherichia coli	Bacteria	RF02541	Ribosome nascent chain in complex with SecA	Electron microscopy	3.1	2019-10-09
94	5U9G\|1\|01	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)	Electron microscopy	3.2	2017-03-22
95	5U9F\|1\|01	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)	Electron microscopy	3.2	2017-03-22
96	5UYM\|1\|01	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)	Electron microscopy	3.2	2017-06-07
97	6ENU\|1\|A	Large subunit ribosomal RNA	23S Ribosomal RNA	Escherichia coli	Bacteria	RF02541	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)	Electron microscopy	3.1	2017-11-22
98	6QUL\|1\|A	Large subunit ribosomal RNA	23S rRNA, P-site fMet-tRNA(fMet)	Escherichia coli	Bacteria	RF02541	Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid	Electron microscopy	3	2019-04-10
99	5WFS\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	2018-05-02
100	6OG7\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)	Electron microscopy	3.3	2019-09-25
101	5WE4\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome-EF-Tu wt complex with GppNHp	Electron microscopy	3.1	2018-04-25
102	6OFX\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Non-rotated ribosome (Structure I)	Electron microscopy	3.3	2019-09-25
103	3JBV\|1\|b	Large subunit ribosomal RNA	RNA (2903-MER)	Escherichia coli	Bacteria	RF02541	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	Electron microscopy	3.32	2016-01-27
104	4V80\|1\|BA		23S rRNA				Crystal structure of the E. coli ribosome bound to CEM-101.	X-ray diffraction	3.3	2014-07-09
105	6C4I\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Conformation of methylated GGQ in the peptidyl transferase center during translation termination	Electron microscopy	3.24	2018-02-21
106	4V80\|1\|DA		23S rRNA				Crystal structure of the E. coli ribosome bound to CEM-101.	X-ray diffraction	3.3	2014-07-09
107	5WDT\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	2018-04-25
108	6ENF\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P	Electron microscopy	3.2	2017-11-22
109	6OGI\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)	Electron microscopy	3.4	2019-09-25
110	5GAE\|1\|A	Large subunit ribosomal RNA	23S rRNA, tRNA CCA end (5'-R(PCPCP*A)-3')	Escherichia coli	Bacteria	RF02541	RNC in complex with a translocating SecYEG	Electron microscopy	3.33	2016-01-27
111	3JCE\|1\|A	Large subunit ribosomal RNA	23 ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	Electron microscopy	3.2	2016-01-13
112	5MDY\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.35	2016-12-21
113	5LZD\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	Electron microscopy	3.4	2016-11-23
114	5WE6\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA	Electron microscopy	3.4	2018-04-25
115	6I0Y\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel	Electron microscopy	3.2	2018-12-05
116	6BU8\|1\|01	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	70S ribosome with S1 domains 1 and 2 (Class 1)	Electron microscopy	3.5	2018-01-31
117	5WFK\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)	Electron microscopy	3.4	2018-05-02
118	5O2R\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome	Electron microscopy	3.4	2017-07-26
119	5LZE\|1\|A	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	Electron microscopy	3.5	2016-11-23
120	5U4I\|1\|A	Large subunit ribosomal RNA	23S rRNA	Escherichia coli	Bacteria	RF02541	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	Electron microscopy	3.5	2017-01-11
121	5IQR\|1\|1	Large subunit ribosomal RNA	LSU rRNA	Escherichia coli	Bacteria	RF02541	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
122	6OSQ\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	RF1 accommodated state bound Release complex 70S at long incubation time point	Electron microscopy	3.5	2019-06-26
123	6ORL\|1\|1	Large subunit ribosomal RNA	23S ribosomal RNA	Escherichia coli	Bacteria	RF02541	RF1 pre-accommodated 70S complex at 24 ms	Electron microscopy	3.5	2019-06-19
124	6C4H\|1\|A	Large subunit ribosomal RNA	23S rRNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF02541	Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)	Electron microscopy	3.1	2018-02-21

Release history

Release	3.125	3.126	3.127	3.128
Date	2020-05-06	2020-05-13	2020-05-20	2020-05-27

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_83717.58	NR_3.5_83717.57	3.125	(123) 3JBV\|1\|b, 3JCE\|1\|A, 4U1U\|1\|BA, 4U1U\|1\|DA, 4U1V\|1\|BA, 4U1V\|1\|DA, 4U20\|1\|BA, 4U20\|1\|DA, 4U24\|1\|BA, 4U24\|1\|DA, 4U25\|1\|BA, 4U25\|1\|DA, 4U26\|1\|BA, 4U26\|1\|DA, 4U27\|1\|BA, 4U27\|1\|DA, 4V4H\|1\|BB, 4V4H\|1\|DB, 4V4Q\|1\|BB, 4V4Q\|1\|DB, 4V50\|1\|BB, 4V50\|1\|DB, 4V52\|1\|BB, 4V52\|1\|DB, 4V54\|1\|BB, 4V54\|1\|DB, 4V57\|1\|BB, 4V57\|1\|DB, 4V64\|1\|BB, 4V64\|1\|DB, 4V6C\|1\|BA, 4V6C\|1\|DA, 4V7S\|1\|BA, 4V7S\|1\|DA, 4V7T\|1\|BA, 4V7T\|1\|DA, 4V7U\|1\|BA, 4V7U\|1\|DA, 4V7V\|1\|BA, 4V7V\|1\|DA, 4V80\|1\|BA, 4V80\|1\|DA, 4V85\|1\|BA, 4V9C\|1\|BA, 4V9C\|1\|DA, 4V9D\|1\|CA, 4V9D\|1\|DA, 4V9O\|1\|AA, 4V9O\|1\|CA, 4V9O\|1\|EA, 4V9O\|1\|GA, 4V9P\|1\|AA, 4V9P\|1\|CA, 4V9P\|1\|EA, 4V9P\|1\|GA, 4WF1\|1\|BA, 4WF1\|1\|DA, 4WOI\|1\|BA, 4WOI\|1\|CA, 4WWW\|1\|RA, 4WWW\|1\|YA, 4YBB\|1\|CA, 4YBB\|1\|DA, 5AFI\|1\|A, 5GAE\|1\|A, 5H5U\|1\|A, 5IQR\|1\|1, 5IT8\|1\|CA, 5IT8\|1\|DA, 5J5B\|1\|CA, 5J5B\|1\|DA, 5J7L\|1\|CA, 5J7L\|1\|DA, 5J88\|1\|CA, 5J88\|1\|DA, 5J8A\|1\|CA, 5J8A\|1\|DA, 5J91\|1\|CA, 5J91\|1\|DA, 5JC9\|1\|CA, 5JC9\|1\|DA, 5LZD\|1\|A, 5LZE\|1\|A, 5MDV\|1\|1, 5MDW\|1\|1, 5MDY\|1\|1, 5MDZ\|1\|1, 5MGP\|1\|A, 5NWY\|1\|N, 5O2R\|1\|A, 5U4I\|1\|A, 5U9F\|1\|01, 5U9G\|1\|01, 5UYM\|1\|01, 5WDT\|1\|A, 5WE4\|1\|A, 5WE6\|1\|A, 5WFK\|1\|A, 5WFS\|1\|A, 6BU8\|1\|01, 6C4H\|1\|A, 6C4I\|1\|A, 6ENF\|1\|A, 6ENU\|1\|A, 6H4N\|1\|A, 6HRM\|1\|1, 6I0Y\|1\|A, 6I7V\|1\|CA, 6I7V\|1\|DA, 6OFX\|1\|1, 6OG7\|1\|1, 6OGI\|1\|1, 6ORE\|1\|1, 6ORL\|1\|1, 6OSQ\|1\|1, 6PJ6\|1\|I, 6QDW\|1\|b, 6QUL\|1\|A, 6S0K\|1\|A, 6SZS\|1\|A, 6TBV\|1\|23S1, 6TC3\|1\|23S1, 6U48\|1\|CA	(1) 6LKQ\|1\|t	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.5_83717.58	NR_3.5_83717.59	3.129	(124) 3JBV\|1\|b, 3JCE\|1\|A, 4U1U\|1\|BA, 4U1U\|1\|DA, 4U1V\|1\|BA, 4U1V\|1\|DA, 4U20\|1\|BA, 4U20\|1\|DA, 4U24\|1\|BA, 4U24\|1\|DA, 4U25\|1\|BA, 4U25\|1\|DA, 4U26\|1\|BA, 4U26\|1\|DA, 4U27\|1\|BA, 4U27\|1\|DA, 4V4H\|1\|BB, 4V4H\|1\|DB, 4V4Q\|1\|BB, 4V4Q\|1\|DB, 4V50\|1\|BB, 4V50\|1\|DB, 4V52\|1\|BB, 4V52\|1\|DB, 4V54\|1\|BB, 4V54\|1\|DB, 4V57\|1\|BB, 4V57\|1\|DB, 4V64\|1\|BB, 4V64\|1\|DB, 4V6C\|1\|BA, 4V6C\|1\|DA, 4V7S\|1\|BA, 4V7S\|1\|DA, 4V7T\|1\|BA, 4V7T\|1\|DA, 4V7U\|1\|BA, 4V7U\|1\|DA, 4V7V\|1\|BA, 4V7V\|1\|DA, 4V80\|1\|BA, 4V80\|1\|DA, 4V85\|1\|BA, 4V9C\|1\|BA, 4V9C\|1\|DA, 4V9D\|1\|CA, 4V9D\|1\|DA, 4V9O\|1\|AA, 4V9O\|1\|CA, 4V9O\|1\|EA, 4V9O\|1\|GA, 4V9P\|1\|AA, 4V9P\|1\|CA, 4V9P\|1\|EA, 4V9P\|1\|GA, 4WF1\|1\|BA, 4WF1\|1\|DA, 4WOI\|1\|BA, 4WOI\|1\|CA, 4WWW\|1\|RA, 4WWW\|1\|YA, 4YBB\|1\|CA, 4YBB\|1\|DA, 5AFI\|1\|A, 5GAE\|1\|A, 5H5U\|1\|A, 5IQR\|1\|1, 5IT8\|1\|CA, 5IT8\|1\|DA, 5J5B\|1\|CA, 5J5B\|1\|DA, 5J7L\|1\|CA, 5J7L\|1\|DA, 5J88\|1\|CA, 5J88\|1\|DA, 5J8A\|1\|CA, 5J8A\|1\|DA, 5J91\|1\|CA, 5J91\|1\|DA, 5JC9\|1\|CA, 5JC9\|1\|DA, 5LZD\|1\|A, 5LZE\|1\|A, 5MDV\|1\|1, 5MDW\|1\|1, 5MDY\|1\|1, 5MDZ\|1\|1, 5MGP\|1\|A, 5NWY\|1\|N, 5O2R\|1\|A, 5U4I\|1\|A, 5U9F\|1\|01, 5U9G\|1\|01, 5UYM\|1\|01, 5WDT\|1\|A, 5WE4\|1\|A, 5WE6\|1\|A, 5WFK\|1\|A, 5WFS\|1\|A, 6BU8\|1\|01, 6C4H\|1\|A, 6C4I\|1\|A, 6ENF\|1\|A, 6ENU\|1\|A, 6H4N\|1\|A, 6HRM\|1\|1, 6I0Y\|1\|A, 6I7V\|1\|CA, 6I7V\|1\|DA, 6LKQ\|1\|t, 6OFX\|1\|1, 6OG7\|1\|1, 6OGI\|1\|1, 6ORE\|1\|1, 6ORL\|1\|1, 6OSQ\|1\|1, 6PJ6\|1\|I, 6QDW\|1\|b, 6QUL\|1\|A, 6S0K\|1\|A, 6SZS\|1\|A, 6TBV\|1\|23S1, 6TC3\|1\|23S1, 6U48\|1\|CA	(0)	(3) 6VWL\|1\|2, 6VWM\|1\|2, 6VWN\|1\|2

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	6OGI\|1\|1	70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)	ELECTRON MICROSCOPY	3.4	2903
2	3JBV\|1\|b	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	ELECTRON MICROSCOPY	3.32	2903
3	4WOI\|1\|BA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897
4	4V9C\|1\|DA	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	2897
5	4U1U\|1\|BA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
6	4WF1\|1\|BA	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	2897
7	4U20\|1\|BA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
8	4U1V\|1\|BA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
9	4U27\|1\|BA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
10	4U25\|1\|BA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
11	4U26\|1\|BA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
12	4U24\|1\|BA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
13	4V9D\|1\|CA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2897
14	6ENU\|1\|A	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)	ELECTRON MICROSCOPY	3.1	2871
15	6ENF\|1\|A	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P	ELECTRON MICROSCOPY	3.2	2807
16	4V85\|1\|BA	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-RAY DIFFRACTION	3.2	2853
17	4V9P\|1\|EA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
18	4V9O\|1\|EA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
19	4V9O\|1\|GA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
20	4V9P\|1\|GA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
21	4V9P\|1\|AA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
22	4V9O\|1\|AA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
23	6I0Y\|1\|A	TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel	ELECTRON MICROSCOPY	3.2	2854
24	4V9O\|1\|CA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
25	4V9P\|1\|CA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	2854
26	4V54\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	2841
27	4V57\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	2841
28	4V52\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	2841
29	4V64\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	2841
30	4V4H\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	2841
31	4V4Q\|1\|BB	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	2841
32	4V50\|1\|BB	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	2841
33	4V6C\|1\|DA	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	2841
34	4V7T\|1\|DA	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	2841
35	4WWW\|1\|YA	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	2841
36	4V80\|1\|DA	Crystal structure of the E. coli ribosome bound to CEM-101.	X-RAY DIFFRACTION	3.3	2841
37	4V7S\|1\|DA	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	2841
38	4V7V\|1\|DA	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	2841
39	4V7U\|1\|DA	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	2841
40	4WOI\|1\|CA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	2897
41	4V9C\|1\|BA	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	2897
42	4V9D\|1\|DA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2896
43	6I7V\|1\|CA	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	2898
44	4U24\|1\|DA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	2897
45	4U26\|1\|DA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	2897
46	4U25\|1\|DA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	2897
47	4U27\|1\|DA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	2897
48	4U1V\|1\|DA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	2897
49	4U20\|1\|DA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	2897
50	4U1U\|1\|DA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	2897
51	4WF1\|1\|DA	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	2897
52	4YBB\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2876
53	5J88\|1\|CA	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	2876
54	5IT8\|1\|CA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	2876
55	5J91\|1\|CA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2876
56	5J5B\|1\|CA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	2876
57	5J8A\|1\|CA	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	2876
58	5J7L\|1\|CA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	2875
59	5JC9\|1\|CA	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	2876
60	6U48\|1\|CA	E. coli 50S with phazolicin (PHZ) bound in exit tunnel	ELECTRON MICROSCOPY	2.87	2875
61	6PJ6\|1\|I	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	2874
62	4V7V\|1\|BA	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	2854
63	4V7U\|1\|BA	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	2854
64	4V6C\|1\|BA	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	2854
65	4V7T\|1\|BA	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	2854
66	4V80\|1\|BA	Crystal structure of the E. coli ribosome bound to CEM-101.	X-RAY DIFFRACTION	3.3	2854
67	4WWW\|1\|RA	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	2854
68	4V7S\|1\|BA	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	2854
69	6I7V\|1\|DA	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	2875
70	4YBB\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	2883
71	5J5B\|1\|DA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	2886
72	5J91\|1\|DA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	2886
73	5J8A\|1\|DA	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	2886
74	5J7L\|1\|DA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	2886
75	5JC9\|1\|DA	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	2886
76	5IT8\|1\|DA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	2886
77	5J88\|1\|DA	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	2886
78	4V57\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	2841
79	4V52\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	2841
80	4V64\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	2841
81	4V54\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	2841
82	4V4H\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	2841
83	4V4Q\|1\|DB	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	2841
84	4V50\|1\|DB	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	2841
85	6QDW\|1\|b	Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide	ELECTRON MICROSCOPY	2.83	2888
86	6QUL\|1\|A	Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid	ELECTRON MICROSCOPY	3	2799
87	6S0K\|1\|A	Ribosome nascent chain in complex with SecA	ELECTRON MICROSCOPY	3.1	2883
88	5GAE\|1\|A	RNC in complex with a translocating SecYEG	ELECTRON MICROSCOPY	3.33	2884
89	5MDY\|1\|1	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.35	2881
90	6ORL\|1\|1	RF1 pre-accommodated 70S complex at 24 ms	ELECTRON MICROSCOPY	3.5	2881
91	6OFX\|1\|1	Non-rotated ribosome (Structure I)	ELECTRON MICROSCOPY	3.3	2903
92	6OG7\|1\|1	70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)	ELECTRON MICROSCOPY	3.3	2903
93	3JCE\|1\|A	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	ELECTRON MICROSCOPY	3.2	2903
94	6TC3\|1\|23S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	ELECTRON MICROSCOPY	2.7	2874
95	6TBV\|1\|23S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	ELECTRON MICROSCOPY	2.7	2874
96	5H5U\|1\|A	Mechanistic insights into the alternative translation termination by ArfA and RF2	ELECTRON MICROSCOPY	3.01	2902
97	5WFS\|1\|A	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	2876
98	5WE4\|1\|A	70S ribosome-EF-Tu wt complex with GppNHp	ELECTRON MICROSCOPY	3.1	2876
99	5WDT\|1\|A	70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	2876
100	5WFK\|1\|A	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)	ELECTRON MICROSCOPY	3.4	2876
101	5WE6\|1\|A	70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA	ELECTRON MICROSCOPY	3.4	2876
102	5UYM\|1\|01	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)	ELECTRON MICROSCOPY	3.2	2903
103	5AFI\|1\|A	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	2876
104	5O2R\|1\|A	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome	ELECTRON MICROSCOPY	3.4	2900
105	5MGP\|1\|A	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	ELECTRON MICROSCOPY	3.1	2900
106	6H4N\|1\|A	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	ELECTRON MICROSCOPY	3	2900
107	5U9F\|1\|01	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)	ELECTRON MICROSCOPY	3.2	2903
108	5U9G\|1\|01	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)	ELECTRON MICROSCOPY	3.2	2903
109	6BU8\|1\|01	70S ribosome with S1 domains 1 and 2 (Class 1)	ELECTRON MICROSCOPY	3.5	2903
110	5LZE\|1\|A	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	ELECTRON MICROSCOPY	3.5	2876
111	5LZD\|1\|A	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	ELECTRON MICROSCOPY	3.4	2879
112	5NWY\|1\|N	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	2898
113	6SZS\|1\|A	Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis	ELECTRON MICROSCOPY	3.06	2903
114	5U4I\|1\|A	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	ELECTRON MICROSCOPY	3.5	2887
115	5IQR\|1\|1	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	2882
116	6OSQ\|1\|1	RF1 accommodated state bound Release complex 70S at long incubation time point	ELECTRON MICROSCOPY	3.5	2881
117	6ORE\|1\|1	Release complex 70S	ELECTRON MICROSCOPY	2.9	2881
118	5MDZ\|1\|1	Structure of the 70S ribosome (empty A site)	ELECTRON MICROSCOPY	3.1	2881
119	5MDW\|1\|1	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.06	2881
120	5MDV\|1\|1	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	2881
121	6C4I\|1\|A	Conformation of methylated GGQ in the peptidyl transferase center during translation termination	ELECTRON MICROSCOPY	3.24	2882
122	6C4H\|1\|A	Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)	ELECTRON MICROSCOPY	3.1	619
123	6HRM\|1\|1	E. coli 70S d2d8 stapled ribosome	ELECTRON MICROSCOPY	2.96	4417
124	6LKQ\|1\|t	The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin	X-RAY DIFFRACTION	3.1	2850

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_3.5_83717.58 Obsolete

Release history

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