Equivalence class NR_3.5_85482.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8AXA|1|B (rep) | sgRNA | Scytonema hofmannii | Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon) | Electron microscopy | 2.96 | 2024-04-10 | |||
| 2 | 8EA4|1|7 | sg_RNA | synthetic construct | V-K CAST Transpososome from Scytonema hofmanni, minor configuration | Electron microscopy | 3 | 2022-11-30 | |||
| 3 | 8AXB|1|B | sgRNA | Scytonema hofmannii | Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon) | Electron microscopy | 2.87 | 2024-04-10 | |||
| 4 | 7PLA|1|B | sgRNA | Scytonema hofmannii | Cryo-EM structure of ShCas12k in complex with a sgRNA and a dsDNA target | Electron microscopy | 3.04 | 2021-12-01 | |||
| 5 | 8BD5|1|B | sgRNA | Scytonema hofmannii | Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex | Electron microscopy | 3.3 | 2022-12-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8BD5|1|B | Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex | ELECTRON MICROSCOPY | 3.3 | 246 | |
| 2 | 8EA4|1|7 | V-K CAST Transpososome from Scytonema hofmanni, minor configuration | ELECTRON MICROSCOPY | 3 | 230 | |
| 3 | 7PLA|1|B | Cryo-EM structure of ShCas12k in complex with a sgRNA and a dsDNA target | ELECTRON MICROSCOPY | 3.04 | 217 | |
| 4 | 8AXA|1|B | Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon) | ELECTRON MICROSCOPY | 2.96 | 235 | |
| 5 | 8AXB|1|B | Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon) | ELECTRON MICROSCOPY | 2.87 | 230 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: