#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16N5P|1|A (rep)ydaO/yuaA leaderRNA (127-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-340 Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-ray diffraction2.992019-11-27
26N5Q|1|AydaO/yuaA leaderRNA (128-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-378a Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-ray diffraction2.952019-11-27
36N5R|1|AydaO/yuaA leaderRNA (125-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-300 Apical Loop Fused to the YdaO Riboswitch ScaffoldX-ray diffraction3.082019-11-27
44QK8|1|AC-di-AMP riboswitchThermoanaerobacter pseudethanolicus c-di-AMP riboswitchX-ray diffraction3.052014-08-06
56N5T|1|AydaO/yuaA leaderRNA (126-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch ScaffoldX-ray diffraction2.792019-11-27
64QKA|1|AC-di-AMP riboswitchc-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soakX-ray diffraction3.22014-08-06
76N5K|1|AydaO/yuaA leaderRNA (125-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-449c Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-ray diffraction3.12019-11-27
86N5N|1|AydaO/yuaA leaderRNA (125-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-208a Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-ray diffraction2.952019-11-27
96N5S|1|AydaO/yuaA leaderRNA (123-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch ScaffoldX-ray diffraction2.82019-11-27
106N5O|1|AydaO/yuaA leaderRNA (126-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-202 Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-ray diffraction2.712019-11-27
116N5L|1|AydaO/yuaA leaderRNA (124-MER)Homo sapiensEukaryaRF00379Structure of Human pir-miRNA-19b-2 Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-ray diffraction2.852019-11-27

Release history

Release3.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.176
Date2019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_94866.1NR_3.5_66230.13.102(2) 4QK8|1|A, 4QKA|1|A(9) 6N5K|1|A, 6N5L|1|A, 6N5N|1|A, 6N5O|1|A, 6N5P|1|A, 6N5Q|1|A, 6N5R|1|A, 6N5S|1|A, 6N5T|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_94866.1NR_3.5_94866.23.177(9) 4QK8|1|A, 4QKA|1|A, 6N5K|1|A, 6N5N|1|A, 6N5O|1|A, 6N5P|1|A, 6N5Q|1|A, 6N5S|1|A, 6N5T|1|A(2) 6N5L|1|A, 6N5R|1|A(2) 6WTL|1|A, 6WTR|1|A

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16N5Q|1|AStructure of Human pir-miRNA-378a Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION2.95127
26N5T|1|AStructure of Human pir-miRNA-378a Apical Loop Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION2.79125
36N5N|1|AStructure of Human pir-miRNA-208a Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION2.95124
46N5R|1|AStructure of Human pir-miRNA-300 Apical Loop Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION3.08124
56N5K|1|AStructure of Human pir-miRNA-449c Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION3.1124
66N5P|1|AStructure of Human pir-miRNA-340 Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION2.99126
76N5S|1|AStructure of Human pir-miRNA-320b-2 Apical Loop and One-base-pair Stem Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION2.8123
86N5L|1|AStructure of Human pir-miRNA-19b-2 Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION2.85123
96N5O|1|AStructure of Human pir-miRNA-202 Apical Loop and One-base-pair Fused to the YdaO Riboswitch ScaffoldX-RAY DIFFRACTION2.71125
104QK8|1|AThermoanaerobacter pseudethanolicus c-di-AMP riboswitchX-RAY DIFFRACTION3.05120
114QKA|1|Ac-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soakX-RAY DIFFRACTION3.2118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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