#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16TPQ|1|V (rep)5S ribosomal RNApre-5S rRNABacillus subtilisBacteriaRF00001RNase M5 bound to 50S ribosome with precursor 5S rRNAElectron microscopy3.072020-09-30
27AQC|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Structure of the bacterial RQC complex (Decoding State)Electron microscopy2.992020-11-25
37AS8|1|B5S ribosomal RNA5s rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy2.92020-12-09
47AQD|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Structure of the bacterial RQC complex (Translocating State)Electron microscopy3.12020-11-25
56TNN|1|V5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAElectron microscopy3.072020-09-30
66HA1|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.12018-08-29
77AS9|1|B5S ribosomal RNA5S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.Electron microscopy3.52020-12-23
86HA8|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.52018-08-29
96PPF|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Bacterial 45SRbgA ribosomal particle class BElectron microscopy3.42019-09-18

Release history

Release3.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.187
Date2020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_97435.7NR_3.5_97435.63.158(8) 6HA1|1|B, 6HA8|1|B, 6PPF|1|B, 6TNN|1|V, 6TPQ|1|V, 7AQC|1|B, 7AQD|1|B, 7AS8|1|B(1) 7AS9|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_97435.7NR_3.5_97435.83.188(9) 6HA1|1|B, 6HA8|1|B, 6PPF|1|B, 6TNN|1|V, 6TPQ|1|V, 7AQC|1|B, 7AQD|1|B, 7AS8|1|B, 7AS9|1|B(0) (1) 7OPE|1|B

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17AS9|1|BBacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.ELECTRON MICROSCOPY3.5112
27AS8|1|BBacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY2.9112
36HA1|1|BCryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.1112
46HA8|1|BCryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.5112
57AQD|1|BStructure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.1112
67AQC|1|BStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.99112
76TPQ|1|VRNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.07123
86TNN|1|VMini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.07116
96PPF|1|BBacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.4112

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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