RNA 3D Hub //

Equivalence class NR_3.5_97539.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17KGB|1|a (rep)Small subunit ribosomal RNA16S rRNAMycobacterium tuberculosis H37RvBacteriaRF00177CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9Electron microscopy2.72022-01-19
27MT7|1|aSmall subunit ribosomal RNA16S rRNAMycobacterium tuberculosis H37RvBacteriaRF00177Mtb 70S with P and E site tRNAsElectron microscopy2.712022-02-02
37MT2|1|aSmall subunit ribosomal RNA16S rRNAMycobacterium tuberculosis H37RvBacteriaRF00177Mtb 70S initiation complexElectron microscopy2.762022-02-02
48FR8|1|aSmall subunit ribosomal RNA16S rRNA (1511-MER)Mycolicibacterium smegmatis MC2 155BacteriaRF00177Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexElectron microscopy2.762023-05-17
57MSM|1|aSmall subunit ribosomal RNA16S rRNAMycobacterium tuberculosis H37RvBacteriaRF00177Mtb 70SIC in complex with MtbEttA at Trans_R0 stateElectron microscopy2.792022-02-02
68WHX|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.Electron microscopy2.82024-02-28
77MT3|1|aSmall subunit ribosomal RNA16S rRNAMycobacterium tuberculosis H37RvBacteriaRF00177Mtb 70S with P/E tRNAElectron microscopy2.82022-02-02
88WIF|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.Electron microscopy2.92024-02-28
97MSC|1|aSmall subunit ribosomal RNA16S rRNAMycobacterium tuberculosis H37RvBacteriaRF00177Mtb 70SIC in complex with MtbEttA at Pre_R0 stateElectron microscopy2.972022-02-02
108V9L|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)Electron microscopy32024-02-07
117MSZ|1|aSmall subunit ribosomal RNA16S rRNAMycobacterium tuberculosis H37RvBacteriaRF00177Mtb 70SIC in complex with MtbEttA at Trans_R1 stateElectron microscopy3.12022-02-02
128V9K|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)Electron microscopy3.12024-02-07
138V9J|1|aSmall subunit ribosomal RNA16S Ribosomal RNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)Electron microscopy3.12024-02-07
147MSH|1|aSmall subunit ribosomal RNA16S rRNAMycobacterium tuberculosis H37RvBacteriaRF00177Mtb 70SIC in complex with MtbEttA at Pre_R1 stateElectron microscopy3.232022-02-02
155ZEB|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. Smegmatis P/P state 70S ribosome structureElectron microscopy3.42018-09-26
165ZEP|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177M. smegmatis hibernating state 70S ribosome structureElectron microscopy3.42018-09-26
176DZI|1|hSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexElectron microscopy3.462018-09-26
188WID|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.Electron microscopy3.52024-02-28
198WIB|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.Electron microscopy3.52024-02-28
208WI9|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.Electron microscopy3.52024-02-28
218WI7|1|aSmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatis MC2 155BacteriaRF00177Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.Electron microscopy3.52024-02-28
225O5J|1|ASmall subunit ribosomal RNA16S rRNAMycolicibacterium smegmatisBacteriaRF00177Structure of the 30S small ribosomal subunit from Mycobacterium smegmatisElectron microscopy3.452017-07-12
235XYU|1|ASmall subunit ribosomal RNA16S RNAMycolicibacterium smegmatisBacteriaRF00177Small subunit of Mycobacterium smegmatis ribosomeElectron microscopy3.452017-09-27

Release history

Release3.3243.3253.3263.3273.3283.3293.3303.3313.332
Date2024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
18FR8|1|aStructure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complexELECTRON MICROSCOPY2.761511
28WHX|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.ELECTRON MICROSCOPY2.81515
38WIF|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.ELECTRON MICROSCOPY2.91517
48WID|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.51515
58WIB|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.ELECTRON MICROSCOPY3.51515
68WI9|1|aCryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.51515
78WI7|1|aCryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.ELECTRON MICROSCOPY3.51515
86DZI|1|hCryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complexELECTRON MICROSCOPY3.461511
95O5J|1|AStructure of the 30S small ribosomal subunit from Mycobacterium smegmatisELECTRON MICROSCOPY3.451511
105ZEB|1|aM. Smegmatis P/P state 70S ribosome structureELECTRON MICROSCOPY3.41506
115ZEP|1|aM. smegmatis hibernating state 70S ribosome structureELECTRON MICROSCOPY3.41506
125XYU|1|ASmall subunit of Mycobacterium smegmatis ribosomeELECTRON MICROSCOPY3.451379
137MSZ|1|aMtb 70SIC in complex with MtbEttA at Trans_R1 stateELECTRON MICROSCOPY3.11512
147MSH|1|aMtb 70SIC in complex with MtbEttA at Pre_R1 stateELECTRON MICROSCOPY3.231512
157KGB|1|aCryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9ELECTRON MICROSCOPY2.71511
167MT7|1|aMtb 70S with P and E site tRNAsELECTRON MICROSCOPY2.711512
177MT2|1|aMtb 70S initiation complexELECTRON MICROSCOPY2.761512
187MSC|1|aMtb 70SIC in complex with MtbEttA at Pre_R0 stateELECTRON MICROSCOPY2.971512
197MSM|1|aMtb 70SIC in complex with MtbEttA at Trans_R0 stateELECTRON MICROSCOPY2.791512
207MT3|1|aMtb 70S with P/E tRNAELECTRON MICROSCOPY2.81512
218V9K|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)ELECTRON MICROSCOPY3.11511
228V9L|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)ELECTRON MICROSCOPY31511
238V9J|1|aCryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)ELECTRON MICROSCOPY3.11511

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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