NR_4.0_10157.39

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|DB (rep)	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	5JC9\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
3	5J8A\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
4	4YBB\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
5	4WOI\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
6	5IT8\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
7	5J91\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
8	4U27\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
9	5J88\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
10	4WF1\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
11	4WOI\|1\|CB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
12	4V9D\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
13	4V9P\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
14	4V9P\|1\|EB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
15	4U24\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
16	4V9O\|1\|AB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
17	4WWW\|1\|RB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
18	4U26\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
19	4V9P\|1\|GB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
20	4V7T\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
21	4V9O\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
22	4V6C\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
23	4U25\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
24	4V9O\|1\|EB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
25	4V9P\|1\|AB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
26	4U1U\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
27	4V7U\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
28	4U20\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
29	4V7V\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
30	4V9C\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
31	4U1V\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
32	4V52\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
33	5J7L\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
34	4V52\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-ray diffraction	3.21	2014-07-09
35	4V7S\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
36	5J8A\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-ray diffraction	3.1	2016-07-06
37	4V9D\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
38	4V50\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
39	5JC9\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-ray diffraction	3.03	2016-07-06
40	4V85\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-ray diffraction	3.2	2014-07-09
41	4V57\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
42	4V64\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
43	4V64\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-ray diffraction	3.5	2014-07-09
44	4V57\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-ray diffraction	3.5	2014-07-09
45	4V6D\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.81	2014-07-09
46	4V54\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
47	4V54\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-ray diffraction	3.3	2014-07-09
48	4V53\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.	X-ray diffraction	3.54	2014-07-09
49	4V53\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.	X-ray diffraction	3.54	2014-07-09
50	4V6E\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.71	2014-07-09
51	4V9O\|1\|GB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
52	4U27\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
53	4V56\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.	X-ray diffraction	3.93	2014-07-09
54	4V55\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).	X-ray diffraction	4	2014-07-09
55	4WF1\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to negamycin.	X-ray diffraction	3.09	2014-11-05
56	5J88\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-ray diffraction	3.32	2016-07-06
57	4U25\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
58	4V4Q\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
59	4U1V\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
60	4V55\|1\|DA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).	X-ray diffraction	4	2014-07-09
61	4V50\|1\|BA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-ray diffraction	3.22	2014-07-09
62	4V56\|1\|BA	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.	X-ray diffraction	3.93	2014-07-09
63	4V89\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)	X-ray diffraction	3.7	2014-07-09
64	4V4Q\|1\|DA	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-ray diffraction	3.46	2014-07-09
65	4YBB\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
66	4U26\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
67	4U1U\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
68	4V9C\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
69	4V7T\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-ray diffraction	3.19	2014-07-09
70	4U20\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
71	5IT8\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	3.12	2016-07-27
72	4U24\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
73	4WWW\|1\|YB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to CEM-101	X-ray diffraction	3.1	2014-12-24
74	5J91\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
75	4V6C\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.19	2014-07-09
76	4V6D\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.81	2014-07-09
77	4V7V\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to clindamycin.	X-ray diffraction	3.29	2014-07-09
78	4V7S\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to telithromycin.	X-ray diffraction	3.25	2014-07-09
79	4V7U\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to erythromycin.	X-ray diffraction	3.1	2014-07-09
80	4V6E\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-ray diffraction	3.71	2014-07-09
81	4V5B\|1\|CA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Structure of PDF binding helix in complex with the ribosome	X-ray diffraction	3.74	2014-07-09
82	4V5B\|1\|AA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Structure of PDF binding helix in complex with the ribosome	X-ray diffraction	3.74	2014-07-09
83	5J5B\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
84	4V4H\|1\|BA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
85	4V4H\|1\|DA	5S ribosomal RNA	5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-ray diffraction	3.46	2014-07-09
86	5J5B\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
87	5AFI\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
88	5NWY\|1\|O	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
89	5MDV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
90	5H5U\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Escherichia coli	Bacteria	RF00001	Mechanistic insights into the alternative translation termination by ArfA and RF2	Electron microscopy	3.01	2017-01-25
91	5WFS\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	2018-05-02
92	5MDZ\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S ribosome (empty A site)	Electron microscopy	3.1	2016-12-14
93	6ENU\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Escherichia coli	Bacteria	RF00001	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)	Electron microscopy	3.1	2017-11-22
94	5MDW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.06	2016-12-14
95	5MGP\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	Electron microscopy	3.1	2016-12-14
96	6ENF\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P	Electron microscopy	3.2	2017-11-22
97	5U9G\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)	Electron microscopy	3.2	2017-03-22
98	5U9F\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)	Electron microscopy	3.2	2017-03-22
99	5UYM\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)	Electron microscopy	3.2	2017-06-07
100	6C4I\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Conformation of methylated GGQ in the peptidyl transferase center during translation termination	Electron microscopy	3.24	2018-02-21
101	5WDT\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	2018-04-25
102	5WE4\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu wt complex with GppNHp	Electron microscopy	3.1	2018-04-25
103	4V80\|1\|BB		5S rRNA				Crystal structure of the E. coli ribosome bound to CEM-101.	X-ray diffraction	3.3	2014-07-09
104	4V80\|1\|DB		5S rRNA				Crystal structure of the E. coli ribosome bound to CEM-101.	X-ray diffraction	3.3	2014-07-09
105	3JBV\|1\|a	5S ribosomal RNA	RNA (118-MER)	Escherichia coli	Bacteria	RF00001	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	Electron microscopy	3.32	2016-01-27
106	5GAE\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC in complex with a translocating SecYEG	Electron microscopy	3.33	2016-01-27
107	5MDY\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	Electron microscopy	3.35	2016-12-21
108	5WFK\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)	Electron microscopy	3.4	2018-05-02
109	5LZD\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	Electron microscopy	3.4	2016-11-23
110	3JCE\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	Electron microscopy	3.2	2016-01-13
111	5O2R\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome	Electron microscopy	3.4	2017-07-26
112	5LZE\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	Electron microscopy	3.5	2016-11-23
113	6BU8\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome with S1 domains 1 and 2 (Class 1)	Electron microscopy	3.5	2018-01-31
114	5U4I\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	Electron microscopy	3.5	2017-01-11
115	5KCR\|1\|1B	5S ribosomal RNA	5S Ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution	Electron microscopy	3.6	2016-08-17
116	5LZA\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)	Electron microscopy	3.6	2016-11-23
117	5UYL\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)	Electron microscopy	3.6	2017-06-14
118	5WE6\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA	Electron microscopy	3.4	2018-04-25
119	5IQR\|1\|3	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
120	5WF0\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)	Electron microscopy	3.6	2018-05-02
121	6ENJ\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Escherichia coli	Bacteria	RF00001	Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)	Electron microscopy	3.7	2017-11-22
122	3JBU\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	Electron microscopy	3.64	2016-01-27
123	5L3P\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex	Electron microscopy	3.7	2016-07-20
124	5GAD\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC-SRP-SR complex early state	Electron microscopy	3.7	2016-01-27
125	3J9Z\|1\|LB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	Electron microscopy	3.6	2015-07-01
126	6DNC\|1\|C	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon	Electron microscopy	3.7	2018-07-04
127	5JU8\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA	Electron microscopy	3.6	2016-07-20
128	5JTE\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA	Electron microscopy	3.6	2016-07-20
129	3JCJ\|1\|0	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association	Electron microscopy	3.7	2016-03-09
130	5UYQ\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)	Electron microscopy	3.8	2017-06-07
131	5GAH\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC in complex with SRP with detached NG domain	Electron microscopy	3.8	2016-01-27
132	6GWT\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)	Electron microscopy	3.8	2018-08-15
133	6GXM\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)	Electron microscopy	3.8	2018-08-22
134	6GBZ\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	50S ribosomal subunit assembly intermediate state 5	Electron microscopy	3.8	2018-06-20
135	6GC8\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	50S ribosomal subunit assembly intermediate - 50S rec*	Electron microscopy	3.8	2018-06-20
136	5GAG\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	RNC in complex with SRP-SR in the closed state	Electron microscopy	3.8	2016-01-27
137	5UYP\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)	Electron microscopy	3.9	2017-06-07
138	6GC0\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	50S ribosomal subunit assembly intermediate state 4	Electron microscopy	3.8	2018-06-20
139	3J9Y\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome	Electron microscopy	3.9	2015-04-15
140	5KPW\|1\|28	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)	Electron microscopy	3.9	2016-09-28
141	5UYK\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)	Electron microscopy	3.9	2017-06-07
142	5KPX\|1\|28	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)	Electron microscopy	3.9	2016-09-28
143	6GXO\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)	Electron microscopy	3.9	2018-08-15
144	6GXN\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)	Electron microscopy	3.9	2018-08-15
145	3JCD\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)	Electron microscopy	3.7	2016-01-13
146	5KPS\|1\|29	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)	Electron microscopy	3.9	2016-09-28
147	5KCS\|1\|1B	5S ribosomal RNA	5S Ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution	Electron microscopy	3.9	2016-08-17
148	5UYN\|1\|02	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)	Electron microscopy	4	2017-06-07
149	4UY8\|1\|B	5S ribosomal RNA	RRNA-5S RIBOSOMAL RNA	Escherichia coli	Bacteria	RF00001	Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome	Electron microscopy	3.8	2014-10-29
150	5NP6\|1\|Z	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	70S structure prior to bypassing	Electron microscopy	3.6	2017-06-14
151	3J7Z\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the E. coli 50S subunit with ErmCL nascent chain	Electron microscopy	3.9	2014-10-22
152	3JA1\|1\|LB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	Electron microscopy	3.6	2015-07-01

Release history

Release	3.36	3.37
Date	2018-08-24	2018-08-31

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_10157.39	NR_4.0_10157.38	3.36	(151) 3J7Z\|1\|B, 3J9Y\|1\|B, 3J9Z\|1\|LB, 3JA1\|1\|LB, 3JBU\|1\|a, 3JBV\|1\|a, 3JCD\|1\|B, 3JCE\|1\|B, 3JCJ\|1\|0, 4U1U\|1\|BB, 4U1U\|1\|DB, 4U1V\|1\|BB, 4U1V\|1\|DB, 4U20\|1\|BB, 4U20\|1\|DB, 4U24\|1\|BB, 4U24\|1\|DB, 4U25\|1\|BB, 4U25\|1\|DB, 4U26\|1\|BB, 4U26\|1\|DB, 4U27\|1\|BB, 4U27\|1\|DB, 4UY8\|1\|B, 4V4H\|1\|BA, 4V4H\|1\|DA, 4V4Q\|1\|BA, 4V4Q\|1\|DA, 4V50\|1\|BA, 4V50\|1\|DA, 4V52\|1\|BA, 4V52\|1\|DA, 4V53\|1\|BA, 4V53\|1\|DA, 4V54\|1\|BA, 4V54\|1\|DA, 4V55\|1\|BA, 4V55\|1\|DA, 4V56\|1\|BA, 4V56\|1\|DA, 4V57\|1\|BA, 4V57\|1\|DA, 4V5B\|1\|AA, 4V5B\|1\|CA, 4V64\|1\|BA, 4V64\|1\|DA, 4V6C\|1\|BB, 4V6C\|1\|DB, 4V6D\|1\|BB, 4V6D\|1\|DB, 4V6E\|1\|BB, 4V6E\|1\|DB, 4V7S\|1\|BB, 4V7S\|1\|DB, 4V7T\|1\|BB, 4V7T\|1\|DB, 4V7U\|1\|BB, 4V7U\|1\|DB, 4V7V\|1\|BB, 4V7V\|1\|DB, 4V80\|1\|BB, 4V80\|1\|DB, 4V85\|1\|BB, 4V89\|1\|BB, 4V9C\|1\|BB, 4V9C\|1\|DB, 4V9D\|1\|CB, 4V9D\|1\|DB, 4V9O\|1\|AB, 4V9O\|1\|CB, 4V9O\|1\|EB, 4V9O\|1\|GB, 4V9P\|1\|AB, 4V9P\|1\|CB, 4V9P\|1\|EB, 4V9P\|1\|GB, 4WF1\|1\|BB, 4WF1\|1\|DB, 4WOI\|1\|BB, 4WOI\|1\|CB, 4WWW\|1\|RB, 4WWW\|1\|YB, 4YBB\|1\|CB, 4YBB\|1\|DB, 5AFI\|1\|B, 5GAD\|1\|B, 5GAE\|1\|B, 5GAG\|1\|B, 5GAH\|1\|B, 5H5U\|1\|B, 5IQR\|1\|3, 5IT8\|1\|CB, 5IT8\|1\|DB, 5J5B\|1\|CB, 5J5B\|1\|DB, 5J7L\|1\|CB, 5J7L\|1\|DB, 5J88\|1\|CB, 5J88\|1\|DB, 5J8A\|1\|CB, 5J8A\|1\|DB, 5J91\|1\|CB, 5J91\|1\|DB, 5JC9\|1\|CB, 5JC9\|1\|DB, 5JTE\|1\|BB, 5JU8\|1\|BB, 5KCR\|1\|1B, 5KCS\|1\|1B, 5KPS\|1\|29, 5KPW\|1\|28, 5KPX\|1\|28, 5L3P\|1\|B, 5LZA\|1\|B, 5LZD\|1\|B, 5LZE\|1\|B, 5MDV\|1\|3, 5MDW\|1\|3, 5MDY\|1\|3, 5MDZ\|1\|3, 5MGP\|1\|B, 5NP6\|1\|Z, 5NWY\|1\|O, 5O2R\|1\|B, 5U4I\|1\|B, 5U9F\|1\|02, 5U9G\|1\|02, 5UYK\|1\|02, 5UYL\|1\|02, 5UYM\|1\|02, 5UYN\|1\|02, 5UYP\|1\|02, 5UYQ\|1\|02, 5WDT\|1\|B, 5WE4\|1\|B, 5WE6\|1\|B, 5WF0\|1\|B, 5WFK\|1\|B, 5WFS\|1\|B, 6BU8\|1\|02, 6C4I\|1\|B, 6DNC\|1\|C, 6ENF\|1\|B, 6ENJ\|1\|B, 6ENU\|1\|B, 6GBZ\|1\|B, 6GC0\|1\|B, 6GC8\|1\|B, 6GWT\|1\|B, 6GXN\|1\|B, 6GXO\|1\|B	(1) 6GXM\|1\|B	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_10157.39	NR_4.0_10157.40	3.38	(152) 3J7Z\|1\|B, 3J9Y\|1\|B, 3J9Z\|1\|LB, 3JA1\|1\|LB, 3JBU\|1\|a, 3JBV\|1\|a, 3JCD\|1\|B, 3JCE\|1\|B, 3JCJ\|1\|0, 4U1U\|1\|BB, 4U1U\|1\|DB, 4U1V\|1\|BB, 4U1V\|1\|DB, 4U20\|1\|BB, 4U20\|1\|DB, 4U24\|1\|BB, 4U24\|1\|DB, 4U25\|1\|BB, 4U25\|1\|DB, 4U26\|1\|BB, 4U26\|1\|DB, 4U27\|1\|BB, 4U27\|1\|DB, 4UY8\|1\|B, 4V4H\|1\|BA, 4V4H\|1\|DA, 4V4Q\|1\|BA, 4V4Q\|1\|DA, 4V50\|1\|BA, 4V50\|1\|DA, 4V52\|1\|BA, 4V52\|1\|DA, 4V53\|1\|BA, 4V53\|1\|DA, 4V54\|1\|BA, 4V54\|1\|DA, 4V55\|1\|BA, 4V55\|1\|DA, 4V56\|1\|BA, 4V56\|1\|DA, 4V57\|1\|BA, 4V57\|1\|DA, 4V5B\|1\|AA, 4V5B\|1\|CA, 4V64\|1\|BA, 4V64\|1\|DA, 4V6C\|1\|BB, 4V6C\|1\|DB, 4V6D\|1\|BB, 4V6D\|1\|DB, 4V6E\|1\|BB, 4V6E\|1\|DB, 4V7S\|1\|BB, 4V7S\|1\|DB, 4V7T\|1\|BB, 4V7T\|1\|DB, 4V7U\|1\|BB, 4V7U\|1\|DB, 4V7V\|1\|BB, 4V7V\|1\|DB, 4V80\|1\|BB, 4V80\|1\|DB, 4V85\|1\|BB, 4V89\|1\|BB, 4V9C\|1\|BB, 4V9C\|1\|DB, 4V9D\|1\|CB, 4V9D\|1\|DB, 4V9O\|1\|AB, 4V9O\|1\|CB, 4V9O\|1\|EB, 4V9O\|1\|GB, 4V9P\|1\|AB, 4V9P\|1\|CB, 4V9P\|1\|EB, 4V9P\|1\|GB, 4WF1\|1\|BB, 4WF1\|1\|DB, 4WOI\|1\|BB, 4WOI\|1\|CB, 4WWW\|1\|RB, 4WWW\|1\|YB, 4YBB\|1\|CB, 4YBB\|1\|DB, 5AFI\|1\|B, 5GAD\|1\|B, 5GAE\|1\|B, 5GAG\|1\|B, 5GAH\|1\|B, 5H5U\|1\|B, 5IQR\|1\|3, 5IT8\|1\|CB, 5IT8\|1\|DB, 5J5B\|1\|CB, 5J5B\|1\|DB, 5J7L\|1\|CB, 5J7L\|1\|DB, 5J88\|1\|CB, 5J88\|1\|DB, 5J8A\|1\|CB, 5J8A\|1\|DB, 5J91\|1\|CB, 5J91\|1\|DB, 5JC9\|1\|CB, 5JC9\|1\|DB, 5JTE\|1\|BB, 5JU8\|1\|BB, 5KCR\|1\|1B, 5KCS\|1\|1B, 5KPS\|1\|29, 5KPW\|1\|28, 5KPX\|1\|28, 5L3P\|1\|B, 5LZA\|1\|B, 5LZD\|1\|B, 5LZE\|1\|B, 5MDV\|1\|3, 5MDW\|1\|3, 5MDY\|1\|3, 5MDZ\|1\|3, 5MGP\|1\|B, 5NP6\|1\|Z, 5NWY\|1\|O, 5O2R\|1\|B, 5U4I\|1\|B, 5U9F\|1\|02, 5U9G\|1\|02, 5UYK\|1\|02, 5UYL\|1\|02, 5UYM\|1\|02, 5UYN\|1\|02, 5UYP\|1\|02, 5UYQ\|1\|02, 5WDT\|1\|B, 5WE4\|1\|B, 5WE6\|1\|B, 5WF0\|1\|B, 5WFK\|1\|B, 5WFS\|1\|B, 6BU8\|1\|02, 6C4I\|1\|B, 6DNC\|1\|C, 6ENF\|1\|B, 6ENJ\|1\|B, 6ENU\|1\|B, 6GBZ\|1\|B, 6GC0\|1\|B, 6GC8\|1\|B, 6GWT\|1\|B, 6GXM\|1\|B, 6GXN\|1\|B, 6GXO\|1\|B	(0)	(1) 6H4N\|1\|B

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	5U4I\|1\|B	Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome	ELECTRON MICROSCOPY	3.5	118
2	3JCE\|1\|B	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	ELECTRON MICROSCOPY	3.2	118
3	3JCD\|1\|B	Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)	ELECTRON MICROSCOPY	3.7	118
4	5NP6\|1\|Z	70S structure prior to bypassing	ELECTRON MICROSCOPY	3.6	120
5	5O2R\|1\|B	Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosome	ELECTRON MICROSCOPY	3.4	120
6	6GXN\|1\|B	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)	ELECTRON MICROSCOPY	3.9	120
7	6GXM\|1\|B	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)	ELECTRON MICROSCOPY	3.8	120
8	6GWT\|1\|B	Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)	ELECTRON MICROSCOPY	3.8	120
9	6GXO\|1\|B	Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)	ELECTRON MICROSCOPY	3.9	120
10	5L3P\|1\|B	Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex	ELECTRON MICROSCOPY	3.7	120
11	5KCS\|1\|1B	Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution	ELECTRON MICROSCOPY	3.9	120
12	5AFI\|1\|B	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	120
13	3J9Y\|1\|B	Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome	ELECTRON MICROSCOPY	3.9	120
14	5UYQ\|1\|02	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)	ELECTRON MICROSCOPY	3.8	120
15	5UYN\|1\|02	70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)	ELECTRON MICROSCOPY	4	120
16	5UYP\|1\|02	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)	ELECTRON MICROSCOPY	3.9	120
17	5UYK\|1\|02	70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)	ELECTRON MICROSCOPY	3.9	120
18	5UYL\|1\|02	70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)	ELECTRON MICROSCOPY	3.6	120
19	5UYM\|1\|02	70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)	ELECTRON MICROSCOPY	3.2	120
20	6BU8\|1\|02	70S ribosome with S1 domains 1 and 2 (Class 1)	ELECTRON MICROSCOPY	3.5	120
21	5U9G\|1\|02	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)	ELECTRON MICROSCOPY	3.2	119
22	5U9F\|1\|02	3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)	ELECTRON MICROSCOPY	3.2	119
23	6DNC\|1\|C	E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon	ELECTRON MICROSCOPY	3.7	120
24	5LZA\|1\|B	Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)	ELECTRON MICROSCOPY	3.6	120
25	5LZE\|1\|B	Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)	ELECTRON MICROSCOPY	3.5	120
26	6ENF\|1\|B	Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P	ELECTRON MICROSCOPY	3.2	120
27	6ENJ\|1\|B	Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)	ELECTRON MICROSCOPY	3.7	120
28	6ENU\|1\|B	Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)	ELECTRON MICROSCOPY	3.1	120
29	5KPW\|1\|28	Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)	ELECTRON MICROSCOPY	3.9	120
30	5KPS\|1\|29	Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)	ELECTRON MICROSCOPY	3.9	120
31	5KPX\|1\|28	Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)	ELECTRON MICROSCOPY	3.9	120
32	5MGP\|1\|B	Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs	ELECTRON MICROSCOPY	3.1	120
33	5WFS\|1\|B	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	120
34	5WE4\|1\|B	70S ribosome-EF-Tu wt complex with GppNHp	ELECTRON MICROSCOPY	3.1	120
35	5WDT\|1\|B	70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	120
36	5WF0\|1\|B	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)	ELECTRON MICROSCOPY	3.6	120
37	5WFK\|1\|B	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)	ELECTRON MICROSCOPY	3.4	120
38	5WE6\|1\|B	70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA	ELECTRON MICROSCOPY	3.4	120
39	5H5U\|1\|B	Mechanistic insights into the alternative translation termination by ArfA and RF2	ELECTRON MICROSCOPY	3.01	120
40	5GAD\|1\|B	RNC-SRP-SR complex early state	ELECTRON MICROSCOPY	3.7	120
41	5GAH\|1\|B	RNC in complex with SRP with detached NG domain	ELECTRON MICROSCOPY	3.8	120
42	5GAG\|1\|B	RNC in complex with SRP-SR in the closed state	ELECTRON MICROSCOPY	3.8	120
43	5LZD\|1\|B	Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)	ELECTRON MICROSCOPY	3.4	120
44	5GAE\|1\|B	RNC in complex with a translocating SecYEG	ELECTRON MICROSCOPY	3.33	120
45	3JCJ\|1\|0	Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association	ELECTRON MICROSCOPY	3.7	118
46	6GC0\|1\|B	50S ribosomal subunit assembly intermediate state 4	ELECTRON MICROSCOPY	3.8	119
47	6GBZ\|1\|B	50S ribosomal subunit assembly intermediate state 5	ELECTRON MICROSCOPY	3.8	119
48	6GC8\|1\|B	50S ribosomal subunit assembly intermediate - 50S rec*	ELECTRON MICROSCOPY	3.8	119
49	4V89\|1\|BB	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)	X-RAY DIFFRACTION	3.7	118
50	4V85\|1\|BB	Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.	X-RAY DIFFRACTION	3.2	118
51	5J88\|1\|DB	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	120
52	5IT8\|1\|DB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	120
53	5JC9\|1\|DB	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	120
54	5J7L\|1\|DB	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	120
55	5J8A\|1\|DB	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	120
56	5J91\|1\|DB	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	120
57	5J5B\|1\|DB	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	120
58	4YBB\|1\|DB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	120
59	5KCR\|1\|1B	Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution	ELECTRON MICROSCOPY	3.6	120
60	4V6E\|1\|BB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.71	118
61	4V6D\|1\|BB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.81	118
62	4V7U\|1\|BB	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	118
63	4V7V\|1\|BB	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	118
64	4V7T\|1\|BB	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	118
65	4V6C\|1\|BB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	118
66	4WWW\|1\|RB	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	118
67	4V80\|1\|BB	Crystal structure of the E. coli ribosome bound to CEM-101.	X-RAY DIFFRACTION	3.3	118
68	4V7S\|1\|BB	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	118
69	4U1V\|1\|BB	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	119
70	4U24\|1\|BB	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	119
71	4U26\|1\|BB	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	119
72	4U27\|1\|BB	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	119
73	4U25\|1\|BB	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	119
74	4WF1\|1\|BB	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	119
75	4U1U\|1\|BB	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	119
76	4U20\|1\|BB	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	119
77	4V9D\|1\|CB	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	119
78	4V9C\|1\|DB	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	119
79	4WOI\|1\|BB	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	119
80	3J7Z\|1\|B	Structure of the E. coli 50S subunit with ErmCL nascent chain	ELECTRON MICROSCOPY	3.9	118
81	4UY8\|1\|B	Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome	ELECTRON MICROSCOPY	3.8	118
82	4V9O\|1\|AB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
83	4V9O\|1\|CB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
84	4V9P\|1\|CB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
85	4V9P\|1\|AB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
86	4V9P\|1\|EB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
87	4V9O\|1\|EB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
88	4YBB\|1\|CB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	118
89	5JTE\|1\|BB	Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA	ELECTRON MICROSCOPY	3.6	118
90	5JU8\|1\|BB	Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA	ELECTRON MICROSCOPY	3.6	118
91	5J88\|1\|CB	Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNA	X-RAY DIFFRACTION	3.32	118
92	5IT8\|1\|CB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	3.12	118
93	5J5B\|1\|CB	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	118
94	5J91\|1\|CB	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	118
95	5J8A\|1\|CB	Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline	X-RAY DIFFRACTION	3.1	118
96	5J7L\|1\|CB	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	118
97	5JC9\|1\|CB	Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA	X-RAY DIFFRACTION	3.03	118
98	5NWY\|1\|O	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	118
99	5MDY\|1\|3	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.35	120
100	5MDW\|1\|3	Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)	ELECTRON MICROSCOPY	3.06	120
101	5MDZ\|1\|3	Structure of the 70S ribosome (empty A site)	ELECTRON MICROSCOPY	3.1	120
102	5MDV\|1\|3	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	120
103	6C4I\|1\|B	Conformation of methylated GGQ in the peptidyl transferase center during translation termination	ELECTRON MICROSCOPY	3.24	120
104	5IQR\|1\|3	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	118
105	4V9D\|1\|DB	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	118
106	4WF1\|1\|DB	Crystal structure of the E. coli ribosome bound to negamycin.	X-RAY DIFFRACTION	3.09	118
107	4U1U\|1\|DB	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	118
108	4U20\|1\|DB	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	118
109	4U1V\|1\|DB	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	118
110	4U27\|1\|DB	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	118
111	4U25\|1\|DB	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	118
112	4U26\|1\|DB	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	118
113	4U24\|1\|DB	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	118
114	4V7U\|1\|DB	Crystal structure of the E. coli ribosome bound to erythromycin.	X-RAY DIFFRACTION	3.1	117
115	4WWW\|1\|YB	Crystal structure of the E. coli ribosome bound to CEM-101	X-RAY DIFFRACTION	3.1	117
116	4V80\|1\|DB	Crystal structure of the E. coli ribosome bound to CEM-101.	X-RAY DIFFRACTION	3.3	117
117	4V7S\|1\|DB	Crystal structure of the E. coli ribosome bound to telithromycin.	X-RAY DIFFRACTION	3.25	117
118	4V7V\|1\|DB	Crystal structure of the E. coli ribosome bound to clindamycin.	X-RAY DIFFRACTION	3.29	117
119	4V7T\|1\|DB	Crystal structure of the E. coli ribosome bound to chloramphenicol.	X-RAY DIFFRACTION	3.19	117
120	4V6C\|1\|DB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.19	117
121	4V6E\|1\|DB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.71	117
122	4V6D\|1\|DB	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting	X-RAY DIFFRACTION	3.81	117
123	4WOI\|1\|CB	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	118
124	4V9C\|1\|BB	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	118
125	4V9P\|1\|GB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
126	4V9O\|1\|GB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
127	3J9Z\|1\|LB	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	ELECTRON MICROSCOPY	3.6	120
128	3JA1\|1\|LB	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	ELECTRON MICROSCOPY	3.6	120
129	4V50\|1\|DA	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	117
130	4V50\|1\|BA	Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.	X-RAY DIFFRACTION	3.22	117
131	4V54\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	117
132	4V55\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).	X-RAY DIFFRACTION	4	117
133	4V53\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.	X-RAY DIFFRACTION	3.54	117
134	4V64\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	117
135	4V52\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	117
136	4V57\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	117
137	4V57\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.	X-RAY DIFFRACTION	3.5	117
138	4V52\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.	X-RAY DIFFRACTION	3.21	117
139	4V53\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.	X-RAY DIFFRACTION	3.54	117
140	4V55\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).	X-RAY DIFFRACTION	4	117
141	4V64\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.	X-RAY DIFFRACTION	3.5	117
142	4V54\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).	X-RAY DIFFRACTION	3.3	117
143	4V56\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.	X-RAY DIFFRACTION	3.93	117
144	4V56\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.	X-RAY DIFFRACTION	3.93	117
145	4V4H\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	117
146	4V4Q\|1\|BA	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	117
147	4V5B\|1\|AA	Structure of PDF binding helix in complex with the ribosome	X-RAY DIFFRACTION	3.74	117
148	4V5B\|1\|CA	Structure of PDF binding helix in complex with the ribosome	X-RAY DIFFRACTION	3.74	117
149	4V4H\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.	X-RAY DIFFRACTION	3.46	117
150	4V4Q\|1\|DA	Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.	X-RAY DIFFRACTION	3.46	117
151	3JBV\|1\|a	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	ELECTRON MICROSCOPY	3.32	117
152	3JBU\|1\|a	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps	ELECTRON MICROSCOPY	3.64	118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_10157.39 Obsolete

Release history

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