#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15HNJ|1|A+ 5HNJ|1|B (rep)RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')synthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction1.242016-04-27
25HNJ|1|C+ 5HNJ|1|DRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')synthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction1.242016-04-27
35HN2|1|B+ 5HN2|1|ARNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')synthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction1.52016-04-27
45HNJ|1|E+ 5HNJ|1|FRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')synthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction1.242016-04-27
55HN2|1|C+ 5HN2|1|DRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')synthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction1.52016-04-27
65HN2|1|E+ 5HN2|1|FRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')synthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction1.52016-04-27
75HNQ|1|A+ 5HNQ|1|B5fC modified RNAsynthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction2.42016-04-27
85HNQ|1|C+ 5HNQ|1|D5fC modified RNAsynthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction2.42016-04-27
95HNQ|1|K+ 5HNQ|1|L5fC modified RNAsynthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction2.42016-04-27
105HNQ|1|E+ 5HNQ|1|F5fC modified RNAsynthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction2.42016-04-27
115HNQ|1|I+ 5HNQ|1|J5fC modified RNAsynthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction2.42016-04-27
125HNQ|1|M5fC modified RNAsynthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction2.42016-04-27
135HNQ|1|G+ 5HNQ|1|H5fC modified RNAsynthetic constructBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-ray diffraction2.42016-04-27

Release history

Release2.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.355
Date2016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-02

Parents

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Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15HNQ|1|C+ 5HNQ|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
25HNQ|1|E+ 5HNQ|1|FBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
35HNQ|1|MBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
45HNQ|1|A+ 5HNQ|1|BBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
55HNJ|1|E+ 5HNJ|1|FBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.247
65HN2|1|C+ 5HN2|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.57
75HNJ|1|A+ 5HNJ|1|BBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.247
85HN2|1|E+ 5HN2|1|FBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.57
95HNQ|1|I+ 5HNQ|1|JBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
105HNQ|1|G+ 5HNQ|1|HBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
115HNQ|1|K+ 5HNQ|1|LBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
125HN2|1|B+ 5HN2|1|ABase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.59
135HNJ|1|C+ 5HNJ|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.247

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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