Equivalence class NR_4.0_19951.27 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4YCO|1|D (rep) | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
| 2 | 4YCO|1|F | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
| 3 | 4YCO|1|E | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
| 4 | 3FOZ|1|C | tRNA(Phe) | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 | ||||
| 5 | 4WOI|1|DW | Transfer RNA | Messenger RNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
| 6 | 5NDK|1|X1 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
| 7 | 4V9H|1|AV | Transfer RNA | mRNA, PE hybrid state tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-ray diffraction | 2.86 | 2014-07-09 |
| 8 | 3L0U|1|A | Transfer RNA | Unmodified tRNAPhe | Escherichia coli | Bacteria | RF00005 | The crystal structure of unmodified tRNAPhe from Escherichia coli | X-ray diffraction | 3 | 2010-03-16 |
| 9 | 2ZM5|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
| 10 | 5NDK|1|X4 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
| 11 | 4V5R|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 12 | 4V9D|1|BV | Transfer RNA | messenger RNA, phenylalanine specific transfer RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
| 13 | 4V5R|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 14 | 4V5P|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 15 | 4V5P|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 16 | 2ZXU|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
| 17 | 4V6F|1|CC | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 18 | 5NDJ|1|X1 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
| 19 | 5NDJ|1|X4 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
| 20 | 4V5S|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 21 | 3FOZ|1|D | tRNA(Phe) | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 | ||||
| 22 | 4WQU|1|BW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
| 23 | 4V5Q|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 24 | 4V5S|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 25 | 4W2E|1|w | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
| 26 | 4V5E|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
| 27 | 6C5L|1|AV | Transfer RNA | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-ray diffraction | 3.2 | 2018-02-21 |
| 28 | 4WQF|1|BW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 29 | 5J4B|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
| 30 | 4V5E|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
| 31 | 6CFJ|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
| 32 | 4V5Q|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 33 | 4V5J|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
| 34 | 5W4K|1|1y | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
| 35 | 6C5L|1|CV | Transfer RNA | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-ray diffraction | 3.2 | 2018-02-21 |
| 36 | 5WIT|1|1w | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
| 37 | 6CFJ|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
| 38 | 4V6F|1|BC | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 39 | 6CFJ|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
| 40 | 5J4C|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
| 41 | 5WIS|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
| 42 | 5J4C|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
| 43 | 4V5D|1|CV | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 44 | 4WQU|1|DW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
| 45 | 4V5D|1|AV | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 46 | 5NDK|1|W1 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
| 47 | 4WT1|1|1K | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 48 | 6CFJ|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2018-03-07 |
| 49 | 5WIS|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
| 50 | 4V51|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 51 | 4WT1|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 52 | 5J4B|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
| 53 | 4V5J|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
| 54 | 4V9C|1|AV | Transfer RNA | Messenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
| 55 | 4WQF|1|DW | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 56 | 5J4C|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
| 57 | 5J4B|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
| 58 | 5NDK|1|W4 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
| 59 | 5J4B|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2016-04-27 |
| 60 | 4WOI|1|AX | Transfer RNA | Messenger RNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-ray diffraction | 3 | 2015-08-05 |
| 61 | 5W4K|1|1w | Transfer RNA | mRNA, tRNA, A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
| 62 | 5J4C|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-ray diffraction | 2.8 | 2016-04-27 |
| 63 | 4WQR|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
| 64 | 4W2G|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 65 | 5WIS|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
| 66 | 5WIT|1|2w | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
| 67 | 4V9D|1|AV | Transfer RNA | messenger RNA, phenylalanine specific transfer RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
| 68 | 5DOY|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 69 | 2ZM5|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
| 70 | 5W4K|1|2y | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
| 71 | 4Y4P|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 72 | 4WSD|1|1K | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
| 73 | 4Z3S|1|1y | Transfer RNA | A/E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
| 74 | 4WT1|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 75 | 4V5S|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 76 | 5DOY|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 77 | 4V51|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 78 | 4V6F|1|BD | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 79 | 5DOY|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 80 | 4WQR|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
| 81 | 4WSD|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
| 82 | 4W2I|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 83 | 4V5S|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 84 | 4Z3S|1|1w | Transfer RNA | A/E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
| 85 | 4Z3S|1|2y | Transfer RNA | A/E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
| 86 | 4W2I|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 87 | 5W4K|1|2w | Transfer RNA | mRNA, tRNA, A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2017-08-30 |
| 88 | 1VY4|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 89 | 4WPO|1|BY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 90 | 4Y4P|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 91 | 4V5D|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 92 | 4V5L|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
| 93 | 4V5D|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 94 | 4WRO|1|1K | Transfer RNA | RNA (30-MER), tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 95 | 4WSD|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
| 96 | 5NDJ|1|W1 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
| 97 | 4WT1|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 98 | 4W2G|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 99 | 4W2I|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 100 | 4W2F|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 101 | 4Y4P|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 102 | 4Z3S|1|2w | Transfer RNA | A/E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
| 103 | 4V5E|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
| 104 | 4V5D|1|AY | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 105 | 4W2I|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 106 | 5NDJ|1|W4 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
| 107 | 1VY4|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 108 | 4V5J|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
| 109 | 4WZO|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
| 110 | 4V5G|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
| 111 | 4W2G|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 112 | 4WPO|1|DY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 113 | 4V5G|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
| 114 | 4V5D|1|CY | Transfer RNA | MRNA, P AND A-SITE PHE-TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 115 | 4V5J|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
| 116 | 4V5Q|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 117 | 4V5Q|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 118 | 5WIS|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-ray diffraction | 2.7 | 2018-02-14 |
| 119 | 2ZXU|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
| 120 | 5NDK|1|V4 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
| 121 | 4WQR|1|1K | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
| 122 | 4V6F|1|CD | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 123 | 5NDJ|1|V4 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
| 124 | 4V5G|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
| 125 | 4W2G|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 126 | 4WZO|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-fMet and mRNA | X-ray diffraction | 3.3 | 2015-06-10 |
| 127 | 5WIT|1|1y | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
| 128 | 6C5L|1|CW | Transfer RNA | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-ray diffraction | 3.2 | 2018-02-21 |
| 129 | 6C5L|1|AW | Transfer RNA | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) | Escherichia coli | Bacteria | RF00005 | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-ray diffraction | 3.2 | 2018-02-21 |
| 130 | 4W2F|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 131 | 4Y4P|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 132 | 4V6F|1|CB | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 133 | 5DOY|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-ray diffraction | 2.6 | 2015-12-30 |
| 134 | 1VY5|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 135 | 1VY4|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 136 | 4WSD|1|1L | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-ray diffraction | 2.95 | 2015-06-10 |
| 137 | 5WIT|1|2y | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-ray diffraction | 2.6 | 2018-02-14 |
| 138 | 5NDK|1|V1 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-ray diffraction | 2.95 | 2017-12-13 |
| 139 | 4V5C|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 140 | 4V5G|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
| 141 | 4WRO|1|3L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 142 | 4V5P|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 143 | 4W2F|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 144 | 4WRO|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 145 | 4V5R|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 146 | 4W2F|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 147 | 4V5C|1|CY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 148 | 4V5R|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 149 | 4V5C|1|AY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 150 | 4V6F|1|BB | Transfer RNA | MRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37 | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
| 151 | 4WPO|1|BW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 152 | 4WRO|1|3K | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-ray diffraction | 3.05 | 2015-06-10 |
| 153 | 4V5P|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 154 | 1VY7|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 155 | 5NDJ|1|V1 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-ray diffraction | 3.15 | 2018-05-02 |
| 156 | 4P6F|1|QW | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
| 157 | 1VY5|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 158 | 4V5E|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
| 159 | 1VY4|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 160 | 4V97|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
| 161 | 4V4I|1|z | Transfer RNA | MRNA, P-site PHE-tRNA | Escherichia coli | Bacteria | RF00005 | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | X-ray diffraction | 3.71 | 2014-07-09 |
| 162 | 4P6F|1|XW | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
| 163 | 1VY7|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 164 | 4V5C|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 165 | 1VY5|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 166 | 1VY5|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 167 | 4WQR|1|1L | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-ray diffraction | 3.15 | 2015-06-10 |
| 168 | 4V9I|1|AW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
| 169 | 4V9I|1|CW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
| 170 | 4V97|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
| 171 | 4WPO|1|DW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 172 | 4V5L|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
| 173 | 4V9C|1|CV | Transfer RNA | Messenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
| 174 | 4V8J|1|AW | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
| 175 | 4W2H|1|AY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 176 | 4WQU|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
| 177 | 4W2H|1|CY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 178 | 4V8J|1|CW | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
| 179 | 4W2E|1|x | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
| 180 | 4WQU|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
| 181 | 4WQF|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 182 | 4WQF|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 183 | 6AZ1|1|4 | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | Electron microscopy | 2.7 | 2017-12-06 |
| 184 | 6AZ1|1|2 | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | Electron microscopy | 2.7 | 2017-12-06 |
| 185 | 3R8O|1|V | messenger RNA, phenylalanine specific transfer RNA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2011-06-01 | ||||
| 186 | 3R8N|1|V | messenger RNA, phenylalanine specific transfer RNA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2011-06-01 | ||||
| 187 | 5UYM|1|Y | Transfer RNA | mRNA, Phe-tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | Electron microscopy | 3.2 | 2017-06-07 |
| 188 | 5UQ8|1|z | Transfer RNA | E-site tRNA Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation) | Electron microscopy | 3.2 | 2018-03-07 |
| 189 | 5AFI|1|y | Transfer RNA | A/T-site Phe-tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
| 190 | 5WDT|1|y | Transfer RNA | mRNA, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GppNHp | Electron microscopy | 3 | 2018-04-25 |
| 191 | 5WFS|1|y | Transfer RNA | mRNA, Phe-tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | Electron microscopy | 3 | 2018-05-02 |
| 192 | 5WE4|1|y | Transfer RNA | mRNA, Phe-tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu wt complex with GppNHp | Electron microscopy | 3.1 | 2018-04-25 |
| 193 | 2JL7|1|V | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit. | X-ray diffraction | 3.45 | 2008-11-04 | ||||
| 194 | 2JL5|1|V | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit. | X-ray diffraction | 3.45 | 2008-11-04 | ||||
| 195 | 2JL7|1|W | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit. | X-ray diffraction | 3.45 | 2008-11-04 | ||||
| 196 | 2JL5|1|W | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit. | X-ray diffraction | 3.45 | 2008-11-04 | ||||
| 197 | 3JCE|1|6 | mRNA, tRNA | synthetic construct | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 | |||
| 198 | 6BU8|1|Y | Transfer RNA | mRNA, tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome with S1 domains 1 and 2 (Class 1) | Electron microscopy | 3.5 | 2018-01-31 |
| 199 | 5UQ7|1|z | Transfer RNA | E-site tRNA Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation) | Electron microscopy | 3.5 | 2018-03-07 |
| 200 | 5UYL|1|Y | Transfer RNA | mRNA, tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | Electron microscopy | 3.6 | 2017-06-14 |
| 201 | 5IQR|1|4 | Transfer RNA | E-site tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
| 202 | 5WE6|1|y | Transfer RNA | mRNA, Phe-tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA | Electron microscopy | 3.4 | 2018-04-25 |
| 203 | 5WFK|1|y | Transfer RNA | mRNA, Phe-tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) | Electron microscopy | 3.4 | 2018-05-02 |
| 204 | 5UYK|1|Y | Transfer RNA | tRNAPhe | Escherichia coli | Bacteria | RF00005 | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | Electron microscopy | 3.9 | 2017-06-07 |
| 205 | 5OT7|1|2 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Elongation factor G-ribosome complex captures in the absence of inhibitors. | Electron microscopy | 3.8 | 2018-02-14 |
| 206 | 5KPX|1|30 | Transfer RNA | A-site tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | Electron microscopy | 3.9 | 2016-09-28 |
| 207 | 5KPW|1|30 | Transfer RNA | A-site tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | Electron microscopy | 3.9 | 2016-09-28 |
| 208 | 5WF0|1|y | Transfer RNA | Phe-tRNA-Phe | Escherichia coli | Bacteria | RF00005 | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2) | Electron microscopy | 3.6 | 2018-05-02 |
| 209 | 3J73|1|S5 | A/P tRNA, Messenger RNA | Structure of the translating mammalian ribosome-Sec61 complex | Electron microscopy | 3.9 | 2014-06-18 | ||||
| 210 | 1VX2|1|5 | A/P tRNA, Messenger RNA | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit. | Electron microscopy | 3.9 | 2014-06-18 | ||||
| 211 | 6Q95|1|8 | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome | Electron microscopy | 3.7 | 2019-02-27 |
| 212 | 3JCE|1|9 | tRNA | synthetic construct | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | Electron microscopy | 3.2 | 2016-01-13 | |||
| 213 | 5IQR|1|6 | Transfer RNA | A/T tRNA(Phe), mRNA | Escherichia coli | Bacteria | RF00005 | Structure of RelA bound to the 70S ribosome | Electron microscopy | 3 | 2016-05-04 |
| 214 | 3JCD|1|8 | mRNA, tRNA | synthetic construct | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | Electron microscopy | 3.7 | 2016-01-13 | |||
| 215 | 3JCD|1|9 | tRNA | synthetic construct | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | Electron microscopy | 3.7 | 2016-01-13 | |||
| 216 | 3JBV|1|V | Transfer RNA | RNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3'), RNA (76-MER) | Escherichia coli | Bacteria | RF00005 | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | Electron microscopy | 3.32 | 2016-01-27 |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5OT7|1|2 | Elongation factor G-ribosome complex captures in the absence of inhibitors. | ELECTRON MICROSCOPY | 3.8 | 76 | |
| 2 | 3J73|1|S5 | Structure of the translating mammalian ribosome-Sec61 complex | ELECTRON MICROSCOPY | 3.9 | 74 | |
| 3 | 1VX2|1|5 | Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit. | ELECTRON MICROSCOPY | 3.9 | 74 | |
| 4 | 6AZ1|1|2 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | ELECTRON MICROSCOPY | 2.7 | 75 | |
| 5 | 4Z3S|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 67 | |
| 6 | 4Z3S|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 66 | |
| 7 | 5DOY|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 | |
| 8 | 5DOY|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 68 | |
| 9 | 4V5C|1|AY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 75 | |
| 10 | 4V5C|1|CY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 75 | |
| 11 | 4V5D|1|AY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 | |
| 12 | 4V5D|1|CY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 | |
| 13 | 4W2I|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 65 | |
| 14 | 4W2F|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 65 | |
| 15 | 4W2G|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 65 | |
| 16 | 1VY5|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 64 | |
| 17 | 1VY4|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 64 | |
| 18 | 4WPO|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 64 | |
| 19 | 5WIT|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 64 | |
| 20 | 5WIT|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 66 | |
| 21 | 4W2I|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 67 | |
| 22 | 4WPO|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 66 | |
| 23 | 1VY4|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 66 | |
| 24 | 1VY5|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 66 | |
| 25 | 4W2G|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 67 | |
| 26 | 4W2F|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 67 | |
| 27 | 5WIS|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 67 | |
| 28 | 4Y4P|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 67 | |
| 29 | 5J4B|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 | |
| 30 | 5J4C|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 67 | |
| 31 | 5W4K|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 67 | |
| 32 | 6CFJ|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 67 | |
| 33 | 5W4K|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 65 | |
| 34 | 5J4C|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 65 | |
| 35 | 5J4B|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 65 | |
| 36 | 5WIS|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 65 | |
| 37 | 4Y4P|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 65 | |
| 38 | 6CFJ|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 65 | |
| 39 | 5NDK|1|W1 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-RAY DIFFRACTION | 2.95 | 76 | |
| 40 | 5NDJ|1|W1 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-RAY DIFFRACTION | 3.15 | 76 | |
| 41 | 5NDJ|1|W4 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-RAY DIFFRACTION | 3.15 | 76 | |
| 42 | 5NDK|1|W4 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-RAY DIFFRACTION | 2.95 | 76 | |
| 43 | 4WRO|1|1K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 67 | |
| 44 | 4WSD|1|1K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 70 | |
| 45 | 4WT1|1|1K | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 69 | |
| 46 | 4WQR|1|1K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.15 | 73 | |
| 47 | 4WQR|1|1L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.15 | 73 | |
| 48 | 4WRO|1|1L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 68 | |
| 49 | 4WSD|1|1L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 72 | |
| 50 | 4WT1|1|1L | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 76 | |
| 51 | 4V6F|1|BB | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 | |
| 52 | 4V6F|1|CB | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 | |
| 53 | 6BU8|1|Y | 70S ribosome with S1 domains 1 and 2 (Class 1) | ELECTRON MICROSCOPY | 3.5 | 76 | |
| 54 | 3JBV|1|V | Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps | ELECTRON MICROSCOPY | 3.32 | 76 | |
| 55 | 4V4I|1|z | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | X-RAY DIFFRACTION | 3.71 | 67 | |
| 56 | 4V9D|1|BV | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 76 | |
| 57 | 3R8O|1|V | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 76 | |
| 58 | 4V9C|1|AV | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 76 | |
| 59 | 4WOI|1|DW | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 76 | |
| 60 | 4V6F|1|CC | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 | |
| 61 | 5NDJ|1|X1 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-RAY DIFFRACTION | 3.15 | 76 | |
| 62 | 5NDK|1|X1 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-RAY DIFFRACTION | 2.95 | 76 | |
| 63 | 4V5Q|1|CV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 64 | 4V5S|1|AV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 | |
| 65 | 4V5Q|1|AV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 66 | 4V5P|1|AV | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 67 | 4V5P|1|CV | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 68 | 4V5R|1|CV | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 | |
| 69 | 4V5R|1|AV | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 | |
| 70 | 4V5S|1|CV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 | |
| 71 | 4V5L|1|AV | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 76 | |
| 72 | 4V5G|1|AV | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 | |
| 73 | 4V5G|1|CV | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 | |
| 74 | 4V5D|1|AV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 | |
| 75 | 2JL7|1|V | Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit. | X-RAY DIFFRACTION | 3.45 | 76 | |
| 76 | 4V5E|1|CV | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 | |
| 77 | 2JL5|1|V | Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit. | X-RAY DIFFRACTION | 3.45 | 76 | |
| 78 | 4V5E|1|AV | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 | |
| 79 | 4V5J|1|CV | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 | |
| 80 | 6C5L|1|CV | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-RAY DIFFRACTION | 3.2 | 76 | |
| 81 | 6C5L|1|AV | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-RAY DIFFRACTION | 3.2 | 76 | |
| 82 | 4V5J|1|AV | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 | |
| 83 | 4V5D|1|CV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 | |
| 84 | 3JCD|1|8 | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | ELECTRON MICROSCOPY | 3.7 | 76 | |
| 85 | 5NDJ|1|X4 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-RAY DIFFRACTION | 3.15 | 76 | |
| 86 | 5NDK|1|X4 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-RAY DIFFRACTION | 2.95 | 76 | |
| 87 | 4V6F|1|BC | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 | |
| 88 | 4WQF|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 69 | |
| 89 | 4WQF|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 69 | |
| 90 | 4WQU|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 69 | |
| 91 | 4WQU|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 69 | |
| 92 | 4W2E|1|w | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 68 | |
| 93 | 5UYK|1|Y | 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I) | ELECTRON MICROSCOPY | 3.9 | 76 | |
| 94 | 3JCD|1|9 | Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) | ELECTRON MICROSCOPY | 3.7 | 76 | |
| 95 | 4V9D|1|AV | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 76 | |
| 96 | 3R8N|1|V | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 76 | |
| 97 | 4V9H|1|AV | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-RAY DIFFRACTION | 2.86 | 74 | |
| 98 | 6AZ1|1|4 | Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin | ELECTRON MICROSCOPY | 2.7 | 76 | |
| 99 | 4WZO|1|3L | Complex of 70S ribosome with tRNA-fMet and mRNA | X-RAY DIFFRACTION | 3.3 | 70 | |
| 100 | 4WRO|1|3L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 68 | |
| 101 | 4WQR|1|3L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.15 | 76 | |
| 102 | 4WT1|1|3L | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 76 | |
| 103 | 4WSD|1|3L | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 71 | |
| 104 | 4V6F|1|BD | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 | |
| 105 | 4V6F|1|CD | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 | |
| 106 | 5NDJ|1|V1 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-RAY DIFFRACTION | 3.15 | 76 | |
| 107 | 5NDK|1|V1 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-RAY DIFFRACTION | 2.95 | 76 | |
| 108 | 5NDK|1|V4 | Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA | X-RAY DIFFRACTION | 2.95 | 76 | |
| 109 | 5NDJ|1|V4 | Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) | X-RAY DIFFRACTION | 3.15 | 76 | |
| 110 | 4WSD|1|3K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin. | X-RAY DIFFRACTION | 2.95 | 72 | |
| 111 | 4WQR|1|3K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site. | X-RAY DIFFRACTION | 3.15 | 76 | |
| 112 | 4WT1|1|3K | Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 76 | |
| 113 | 4WRO|1|3K | Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site | X-RAY DIFFRACTION | 3.05 | 68 | |
| 114 | 4WZO|1|3K | Complex of 70S ribosome with tRNA-fMet and mRNA | X-RAY DIFFRACTION | 3.3 | 70 | |
| 115 | 4V5L|1|AW | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 76 | |
| 116 | 5IQR|1|4 | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 76 | |
| 117 | 4V5G|1|CW | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 | |
| 118 | 4V5G|1|AW | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 | |
| 119 | 4V5Q|1|AW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 120 | 4V5S|1|AW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 | |
| 121 | 4V5P|1|AW | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 122 | 4V5P|1|CW | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 123 | 4V5R|1|CW | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 | |
| 124 | 4V5R|1|AW | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 | |
| 125 | 4V5S|1|CW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 | |
| 126 | 4V5Q|1|CW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 127 | 3JCE|1|9 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | ELECTRON MICROSCOPY | 3.2 | 76 | |
| 128 | 4V9I|1|AW | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 76 | |
| 129 | 4V9I|1|CW | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 76 | |
| 130 | 6C5L|1|CW | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-RAY DIFFRACTION | 3.2 | 75 | |
| 131 | 6C5L|1|AW | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus) | X-RAY DIFFRACTION | 3.2 | 75 | |
| 132 | 4V5J|1|CW | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 | |
| 133 | 4V5J|1|AW | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 | |
| 134 | 4V5E|1|AW | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 | |
| 135 | 2JL5|1|W | Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit. | X-RAY DIFFRACTION | 3.45 | 76 | |
| 136 | 2JL7|1|W | Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit. | X-RAY DIFFRACTION | 3.45 | 76 | |
| 137 | 4V5E|1|CW | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 | |
| 138 | 4P6F|1|QW | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 76 | |
| 139 | 4V97|1|AW | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 76 | |
| 140 | 4V8J|1|AW | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 76 | |
| 141 | 4V5C|1|AW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 | |
| 142 | 4V5D|1|CW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 76 | |
| 143 | 4V5D|1|AW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 76 | |
| 144 | 4V5C|1|CW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 | |
| 145 | 4V51|1|AW | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
| 146 | 4V51|1|CW | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
| 147 | 4V8J|1|CW | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 76 | |
| 148 | 4V97|1|CW | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 76 | |
| 149 | 4P6F|1|XW | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 76 | |
| 150 | 6Q95|1|8 | Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome | ELECTRON MICROSCOPY | 3.7 | 76 | |
| 151 | 5UQ7|1|z | 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation) | ELECTRON MICROSCOPY | 3.5 | 76 | |
| 152 | 5WIT|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 66 | |
| 153 | 6CFJ|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 66 | |
| 154 | 5J4C|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 66 | |
| 155 | 5J4B|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 66 | |
| 156 | 4Y4P|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 66 | |
| 157 | 4W2F|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 66 | |
| 158 | 4W2G|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 66 | |
| 159 | 4W2I|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 66 | |
| 160 | 1VY5|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 66 | |
| 161 | 1VY4|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 66 | |
| 162 | 4WQU|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 66 | |
| 163 | 4WQF|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 66 | |
| 164 | 4WPO|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 66 | |
| 165 | 5DOY|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 66 | |
| 166 | 4Z3S|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 66 | |
| 167 | 5WIS|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 66 | |
| 168 | 5W4K|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 67 | |
| 169 | 5W4K|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 68 | |
| 170 | 5WIS|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution | X-RAY DIFFRACTION | 2.7 | 67 | |
| 171 | 4Y4P|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 67 | |
| 172 | 5J4B|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 | |
| 173 | 5J4C|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 67 | |
| 174 | 6CFJ|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution | X-RAY DIFFRACTION | 2.8 | 67 | |
| 175 | 5DOY|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 | |
| 176 | 4Z3S|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 67 | |
| 177 | 5WIT|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution | X-RAY DIFFRACTION | 2.6 | 67 | |
| 178 | 4W2F|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 67 | |
| 179 | 4WPO|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 67 | |
| 180 | 4WQU|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 67 | |
| 181 | 4WQF|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 67 | |
| 182 | 4W2E|1|x | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 67 | |
| 183 | 1VY4|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 67 | |
| 184 | 1VY5|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 67 | |
| 185 | 4W2I|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 67 | |
| 186 | 4W2G|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 67 | |
| 187 | 4W2H|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 18 | |
| 188 | 3FOZ|1|C | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-RAY DIFFRACTION | 2.5 | 74 | |
| 189 | 2ZM5|1|C | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-RAY DIFFRACTION | 2.55 | 74 | |
| 190 | 2ZXU|1|C | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-RAY DIFFRACTION | 2.75 | 74 | |
| 191 | 2ZXU|1|D | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-RAY DIFFRACTION | 2.75 | 69 | |
| 192 | 2ZM5|1|D | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-RAY DIFFRACTION | 2.55 | 69 | |
| 193 | 4V9C|1|CV | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 76 | |
| 194 | 4WOI|1|AX | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 76 | |
| 195 | 3L0U|1|A | The crystal structure of unmodified tRNAPhe from Escherichia coli | X-RAY DIFFRACTION | 3 | 73 | |
| 196 | 3JCE|1|6 | Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) | ELECTRON MICROSCOPY | 3.2 | 75 | |
| 197 | 4YCO|1|F | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-RAY DIFFRACTION | 2.1 | 71 | |
| 198 | 4YCO|1|D | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-RAY DIFFRACTION | 2.1 | 74 | |
| 199 | 4YCO|1|E | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-RAY DIFFRACTION | 2.1 | 67 | |
| 200 | 5UYL|1|Y | 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II) | ELECTRON MICROSCOPY | 3.6 | 76 | |
| 201 | 5UYM|1|Y | 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III) | ELECTRON MICROSCOPY | 3.2 | 76 | |
| 202 | 5AFI|1|y | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 67 | |
| 203 | 5WE6|1|y | 70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA | ELECTRON MICROSCOPY | 3.4 | 67 | |
| 204 | 5WFS|1|y | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | ELECTRON MICROSCOPY | 3 | 67 | |
| 205 | 5WE4|1|y | 70S ribosome-EF-Tu wt complex with GppNHp | ELECTRON MICROSCOPY | 3.1 | 67 | |
| 206 | 5WDT|1|y | 70S ribosome-EF-Tu H84A complex with GppNHp | ELECTRON MICROSCOPY | 3 | 67 | |
| 207 | 5WF0|1|y | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2) | ELECTRON MICROSCOPY | 3.6 | 67 | |
| 208 | 5WFK|1|y | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3) | ELECTRON MICROSCOPY | 3.4 | 67 | |
| 209 | 5KPW|1|30 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III) | ELECTRON MICROSCOPY | 3.9 | 76 | |
| 210 | 5KPX|1|30 | Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV) | ELECTRON MICROSCOPY | 3.9 | 76 | |
| 211 | 5IQR|1|6 | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 67 | |
| 212 | 5UQ8|1|z | 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation) | ELECTRON MICROSCOPY | 3.2 | 76 | |
| 213 | 1VY7|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 5 | |
| 214 | 1VY7|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 5 | |
| 215 | 4W2H|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 5 | |
| 216 | 3FOZ|1|D | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-RAY DIFFRACTION | 2.5 | 69 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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