Equivalence class NR_4.0_20829.6 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6BK8|1|2+ 6BK8|1|6+ 6BK8|1|i (rep) | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | RNA (59-MER), U2 snRNA, U6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | S. cerevisiae spliceosomal post-catalytic P complex | Electron microscopy | 3.3 | 296 | 2018-02-21 |
| 2 | 6EXN|1|2+ 6EXN|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Intron lariat: UBC4 RNA, U2 snRNA, U6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Post-catalytic P complex spliceosome with 3' splice site docked | Electron microscopy | 3.7 | 238 | 2018-01-17 |
| 3 | 5ZWM|1|H+ 5ZWM|1|I+ 5ZWM|1|F | U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNA | Pre-mRNA-BPS, U2 snRNA, U4 snRNA, U6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00015 + RF00026 | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | Electron microscopy | 3.4 | 415 | 2018-08-29 |
| 4 | 5LJ3|1|Z+ 5LJ3|1|V | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Intron of UBC4 pre-mRNA, U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA) | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00026 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 268 | 2016-08-03 |
| 5 | 5ZWO|1|H+ 5ZWO|1|I+ 5ZWO|1|F | U2 splicesomal small nuclear RNA + U4 spliceosomal RNA + U6 spliceosomal RNA | Pre-mRNA, U2 snRNA, U4 snRNA, U6 snRNA | Saccharomyces cerevisiae | Eukarya | RF00004 + RF00015 + RF00026 | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | Electron microscopy | 3.9 | 359 | 2018-08-29 |
Release history
| Release | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_20829.6 | NR_4.0_20829.5 | 3.37 | (3) 5LJ3|1|Z+5LJ3|1|V, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6EXN|1|2+6EXN|1|6 | (2) 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_20829.6 | NR_4.0_20829.7 | 3.71 | (5) 5LJ3|1|Z+5LJ3|1|V, 5ZWM|1|H+5ZWM|1|I+5ZWM|1|F, 5ZWO|1|H+5ZWO|1|I+5ZWO|1|F, 6BK8|1|2+6BK8|1|6+6BK8|1|i, 6EXN|1|2+6EXN|1|6 | (0) | (4) 6J6G|1|L+6J6G|1|E, 6J6H|1|L+6J6H|1|E, 6J6N|1|L+6J6N|1|E, 6J6Q|1|L+6J6Q|1|E |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5ZWO|1|H+ 5ZWO|1|I+ 5ZWO|1|F | Cryo-EM structure of the yeast B complex at average resolution of 3.9 angstrom | ELECTRON MICROSCOPY | 3.9 | 359 | |
| 2 | 5ZWM|1|H+ 5ZWM|1|I+ 5ZWM|1|F | Cryo-EM structure of the yeast pre-B complex at an average resolution of 3.4~4.6 angstrom (tri-snRNP and U2 snRNP Part) | ELECTRON MICROSCOPY | 3.4 | 415 | |
| 3 | 5LJ3|1|Z+ 5LJ3|1|V | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 268 | |
| 4 | 6BK8|1|2+ 6BK8|1|6+ 6BK8|1|i | S. cerevisiae spliceosomal post-catalytic P complex | ELECTRON MICROSCOPY | 3.3 | 296 | |
| 5 | 6EXN|1|2+ 6EXN|1|6 | Post-catalytic P complex spliceosome with 3' splice site docked | ELECTRON MICROSCOPY | 3.7 | 238 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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