Equivalence class NR_4.0_30457.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5GAN|1|U (rep) | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | Electron microscopy | 3.7 | 2016-01-27 |
| 2 | 5LJ3|1|U | U5 spliceosomal RNA | Exon 1 (5' exon) of UBC4 pre-mRNA, U5 snRNA (small nuclear RNA) | Saccharomyces cerevisiae | Eukarya | RF00020 | Structure of the core of the yeast spliceosome immediately after branching | Electron microscopy | 3.8 | 2016-08-03 |
| 3 | 5GAM|1|U | U5 spliceosomal RNA | U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.7 | 2016-02-03 |
| 4 | 5GMK|1|D | U5 spliceosomal RNA | 5'-Exon, U5 snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | Electron microscopy | 3.4 | 2016-08-17 |
| 5 | 3JCM|1|F | U5 spliceosomal RNA | pre-mRNA, SNR6 snRNA, SNR7-L snRNA | Saccharomyces cerevisiae | Eukarya | RF00020 | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | Electron microscopy | 3.8 | 2016-02-24 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_30457.1 | NR_all_62883.1 | 2.91 | (1) 3JCM|1|F | (4) 5GAM|1|U, 5GAN|1|U, 5GMK|1|D, 5LJ3|1|U | (0) |
| NR_4.0_30457.1 | NR_all_65861.1 | 2.91 | (2) 5GAM|1|U, 5GAN|1|U | (3) 3JCM|1|F, 5GMK|1|D, 5LJ3|1|U | (0) |
| NR_4.0_30457.1 | NR_all_95031.1 | 2.91 | (2) 5GMK|1|D, 5LJ3|1|U | (3) 3JCM|1|F, 5GAM|1|U, 5GAN|1|U | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3JCM|1|F | Cryo-EM structure of the spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.8 | 113 | |
| 2 | 5GAM|1|U | Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP | ELECTRON MICROSCOPY | 3.7 | 141 | |
| 3 | 5GAN|1|U | The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom | ELECTRON MICROSCOPY | 3.7 | 141 | |
| 4 | 5LJ3|1|U | Structure of the core of the yeast spliceosome immediately after branching | ELECTRON MICROSCOPY | 3.8 | 141 | |
| 5 | 5GMK|1|D | Cryo-EM structure of the Catalytic Step I spliceosome (C complex) at 3.4 angstrom resolution | ELECTRON MICROSCOPY | 3.4 | 117 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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