Equivalence class NR_4.0_37229.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1MFQ|1|A (rep) | Signal recognition particle RNA | 7S RNA of human SRP | Homo sapiens | Eukarya | RF00017 | Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle | X-ray diffraction | 3.1 | 128 | 2002-09-20 |
| 2 | 5M73|1|A | Signal recognition particle RNA | Human gene for small cytoplasmic 7SL RNA (7L30.1) | Homo sapiens | Eukarya | RF00017 | Structure of the human SRP S domain with SRP72 RNA-binding domain | X-ray diffraction | 3.4 | 145 | 2016-12-07 |
| 3 | 5M73|1|E | Signal recognition particle RNA | Human gene for small cytoplasmic 7SL RNA (7L30.1) | Homo sapiens | Eukarya | RF00017 | Structure of the human SRP S domain with SRP72 RNA-binding domain | X-ray diffraction | 3.4 | 145 | 2016-12-07 |
| 4 | 4P3E|1|A | Signal recognition particle RNA | SRP RNA (124-mer) | Homo sapiens | Eukarya | RF00017 | Structure of the human SRP S domain | X-ray diffraction | 3.5 | 124 | 2014-04-16 |
| 5 | 3KTV|1|C | Signal recognition particle RNA | SRP RNA | Homo sapiens | Eukarya | RF00017 | Crystal structure of the human SRP19/S-domain SRP RNA complex | X-ray diffraction | 3.8 | 108 | 2010-02-16 |
| 6 | 3KTV|1|A | Signal recognition particle RNA | SRP RNA | Homo sapiens | Eukarya | RF00017 | Crystal structure of the human SRP19/S-domain SRP RNA complex | X-ray diffraction | 3.8 | 108 | 2010-02-16 |
| 7 | 7OBR|1|1 | Signal recognition particle RNA | SRP RNA | Canis lupus familiaris | Eukarya | RF00017 | RNC-SRP early complex | Electron microscopy | 2.8 | 249 | 2021-07-21 |
| 8 | 7NFX|1|1 | Signal recognition particle RNA | SRP RNA 7SL | Homo sapiens | Eukarya | RF00017 | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | Electron microscopy | 3.2 | 249 | 2021-06-02 |
| 9 | 7OBQ|1|1 | Signal recognition particle RNA | SRP RNA | Canis lupus familiaris | Eukarya | RF00017 | SRP-SR at the distal site conformation | Electron microscopy | 3.9 | 165 | 2021-07-21 |
Release history
| Release | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_37229.1 | NR_4.0_54173.1 | 3.188 | (2) 5M73|1|A, 5M73|1|E | (7) 1MFQ|1|A, 3KTV|1|A, 3KTV|1|C, 4P3E|1|A, 7NFX|1|1, 7OBQ|1|1, 7OBR|1|1 | (0) |
| NR_4.0_37229.1 | NR_4.0_60015.1 | 3.188 | (1) 7NFX|1|1 | (8) 1MFQ|1|A, 3KTV|1|A, 3KTV|1|C, 4P3E|1|A, 5M73|1|A, 5M73|1|E, 7OBQ|1|1, 7OBR|1|1 | (0) |
| NR_4.0_37229.1 | NR_4.0_64349.1 | 3.188 | (4) 1MFQ|1|A, 3KTV|1|A, 3KTV|1|C, 4P3E|1|A | (5) 5M73|1|A, 5M73|1|E, 7NFX|1|1, 7OBQ|1|1, 7OBR|1|1 | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 1MFQ|1|A | Crystal Structure Analysis of a Ternary S-Domain Complex of Human Signal Recognition Particle | X-RAY DIFFRACTION | 3.1 | 128 | |
| 2 | 3KTV|1|A | Crystal structure of the human SRP19/S-domain SRP RNA complex | X-RAY DIFFRACTION | 3.8 | 108 | |
| 3 | 3KTV|1|C | Crystal structure of the human SRP19/S-domain SRP RNA complex | X-RAY DIFFRACTION | 3.8 | 108 | |
| 4 | 4P3E|1|A | Structure of the human SRP S domain | X-RAY DIFFRACTION | 3.5 | 124 | |
| 5 | 7OBR|1|1 | RNC-SRP early complex | ELECTRON MICROSCOPY | 2.8 | 249 | |
| 6 | 7NFX|1|1 | Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A | ELECTRON MICROSCOPY | 3.2 | 249 | |
| 7 | 7OBQ|1|1 | SRP-SR at the distal site conformation | ELECTRON MICROSCOPY | 3.9 | 165 | |
| 8 | 5M73|1|A | Structure of the human SRP S domain with SRP72 RNA-binding domain | X-RAY DIFFRACTION | 3.4 | 145 | |
| 9 | 5M73|1|E | Structure of the human SRP S domain with SRP72 RNA-binding domain | X-RAY DIFFRACTION | 3.4 | 145 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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