Equivalence class NR_4.0_37403.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8EOS|1|R (rep) | RNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | M. tuberculosis RNAP elongation complex with NusG and CMPCPP | Electron microscopy | 3.1 | 13 | 2023-02-01 | |||
| 2 | 8EOT|1|R | RNA (5'-R(P*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | M. tuberculosis RNAP elongation complex with NusG | Electron microscopy | 3.3 | 13 | 2023-02-01 | |||
| 3 | 6J9E|1|I | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | Electron microscopy | 3.41 | 12 | 2019-07-17 | |||
| 4 | 6M6C|1|R | RNA | Thermus thermophilus | CryoEM structure of Thermus thermophilus RNA polymerase elongation complex | Electron microscopy | 3.1 | 10 | 2020-10-14 | |||
| 5 | 6X50|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - V state | Electron microscopy | 3.3 | 9 | 2021-02-03 | |||
| 6 | 6C6T|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | Electron microscopy | 3.5 | 10 | 2018-07-25 | |||
| 7 | 6J9F|1|I | RNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | synthetic construct | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | Electron microscopy | 3.95 | 12 | 2019-07-17 | |||
| 8 | 6X4Y|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - IV state | Electron microscopy | 3.6 | 10 | 2021-02-03 | |||
| 9 | 6X43|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - II state | Electron microscopy | 3.6 | 10 | 2021-02-03 | |||
| 10 | 6C6U|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | Electron microscopy | 3.7 | 10 | 2018-07-25 | |||
| 11 | 6C6S|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | Electron microscopy | 3.7 | 10 | 2018-07-25 | |||
| 12 | 6X4W|1|R | RNA (20-mer) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - III state | Electron microscopy | 3.8 | 9 | 2021-02-03 | |||
| 13 | 6X2N|1|R | RNA (20-MER) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - I state | Electron microscopy | 3.9 | 9 | 2021-02-03 | |||
| 14 | 6X2F|1|R | RNA (20-MER) | Escherichia coli | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | Electron microscopy | 4 | 9 | 2021-02-03 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_37403.2 | NR_4.0_06923.1 | 3.268 | (1) 6M6C|1|R | (13) 6C6S|1|R, 6C6T|1|R, 6C6U|1|R, 6J9E|1|I, 6J9F|1|I, 6X2F|1|R, 6X2N|1|R, 6X43|1|R, 6X4W|1|R, 6X4Y|1|R, 6X50|1|R, 8EOS|1|R, 8EOT|1|R | (0) |
| NR_4.0_37403.2 | NR_4.0_37403.1 | 3.268 | (11) 6C6S|1|R, 6C6T|1|R, 6C6U|1|R, 6J9E|1|I, 6J9F|1|I, 6X2F|1|R, 6X2N|1|R, 6X43|1|R, 6X4W|1|R, 6X4Y|1|R, 6X50|1|R | (3) 6M6C|1|R, 8EOS|1|R, 8EOT|1|R | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 6X43|1|R | Mfd-bound E.coli RNA polymerase elongation complex - II state | ELECTRON MICROSCOPY | 3.6 | 10 | |
| 2 | 6C6S|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 10 | |
| 3 | 6C6T|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 10 | |
| 4 | 6C6U|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 10 | |
| 5 | 6X50|1|R | Mfd-bound E.coli RNA polymerase elongation complex - V state | ELECTRON MICROSCOPY | 3.3 | 9 | |
| 6 | 6X2N|1|R | Mfd-bound E.coli RNA polymerase elongation complex - I state | ELECTRON MICROSCOPY | 3.9 | 9 | |
| 7 | 6M6C|1|R | CryoEM structure of Thermus thermophilus RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.1 | 10 | |
| 8 | 6X2F|1|R | Mfd-bound E.coli RNA polymerase elongation complex - L2 state | ELECTRON MICROSCOPY | 4 | 9 | |
| 9 | 6J9F|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.95 | 12 | |
| 10 | 6J9E|1|I | Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with NusA and the bacteriophage protein P7 | ELECTRON MICROSCOPY | 3.41 | 12 | |
| 11 | 6X4W|1|R | Mfd-bound E.coli RNA polymerase elongation complex - III state | ELECTRON MICROSCOPY | 3.8 | 9 | |
| 12 | 6X4Y|1|R | Mfd-bound E.coli RNA polymerase elongation complex - IV state | ELECTRON MICROSCOPY | 3.6 | 10 | |
| 13 | 8EOS|1|R | M. tuberculosis RNAP elongation complex with NusG and CMPCPP | ELECTRON MICROSCOPY | 3.1 | 13 | |
| 14 | 8EOT|1|R | M. tuberculosis RNAP elongation complex with NusG | ELECTRON MICROSCOPY | 3.3 | 13 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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