#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
16ZMI|1|S2 (rep)Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexElectron microscopy2.617402020-08-19
26ZM7|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.717402020-07-29
36ZLW|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunitElectron microscopy2.616652020-07-29
46ZVH|1|2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960EDF1-ribosome complexElectron microscopy2.917402020-08-19
56Z6N|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.917402020-07-29
66ZOJ|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, composite mapElectron microscopy2.817042020-07-22
76ZP4|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2Electron microscopy2.917212020-07-29
86ZXG|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1Electron microscopy2.616512020-12-02
96QZP|1|S2Small subunit ribosomal RNA18S rRNA (1740-MER)Homo sapiensEukaryaRF01960High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.917402019-04-24
106ZME|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexElectron microscopy317402020-08-12
116Z6L|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy317402020-07-29
126ZV6|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)Electron microscopy2.916832021-05-12
136ZON|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1Electron microscopy317212020-07-29
146ZXH|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2Electron microscopy2.716512020-12-16
157QVP|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy317142022-10-12
167K5I|1|2Small subunit ribosomal RNA40S ribosomal rRNA18SHomo sapiensEukaryaRF01960SARS-COV-2 nsp1 in complex with human 40S ribosomeElectron microscopy2.916652020-10-14
177QVP|1|S3Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy317052022-10-12
186ZMO|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexElectron microscopy3.117402020-08-19
196Z6M|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1Electron microscopy3.117402020-07-29
207MQA|1|L1Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human SSU processome, state post-A1Electron microscopy2.715702021-09-22
216ZXE|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2Electron microscopy316452020-12-02
226Y2L|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in POST stateElectron microscopy317132020-04-15
236ZUO|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)Electron microscopy3.116652021-05-12
246XA1|1|S2Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of a drug-like compound stalled human translation termination complexElectron microscopy2.815902020-10-07
256OM0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.117142019-06-19
266OLE|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsElectron microscopy3.117142019-06-19
276ZN5|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2Electron microscopy3.216712020-07-29
286ZXD|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1Electron microscopy3.216452020-12-02
296Y0G|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in classical-PRE stateElectron microscopy3.216972020-04-15
306ZMT|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complexElectron microscopy315692020-08-19
317A09|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIElectron microscopy3.517212020-10-14
326OLG|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)Electron microscopy3.417082019-06-19
337TQL|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.Electron microscopy3.416562022-04-27
346OLI|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)Electron microscopy3.517142019-06-19
357QP7|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of the human 48S initiation complex in closed state (h48S AUG closed)Electron microscopy3.717192022-05-11
366ZMW|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of a human 48S translational initiation complexElectron microscopy3.717192020-09-23
376Y57|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of human ribosome in hybrid-PRE stateElectron microscopy3.516582020-04-15
386ZVJ|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of a human ABCE1-bound 43S pre-initiation complex - State IIElectron microscopy3.817202020-10-07
396G18|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State CElectron microscopy3.616582018-06-06
406G5I|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State RElectron microscopy3.516572018-06-06
414UG0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.617422015-06-10
426ZXF|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State GElectron microscopy3.716562020-12-02
436IP8|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)Electron microscopy3.917422019-05-29
446IP5|1|2mSmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)Electron microscopy3.917422019-05-29
456G5H|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureElectron microscopy3.616652018-06-06
466ZOK|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, focused on bodyElectron microscopy2.812322020-07-29
476OM7|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsElectron microscopy3.717142019-06-19
486OLZ|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAElectron microscopy3.917082019-06-19
495AJ0|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.517082015-05-20
506OLF|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsElectron microscopy3.917142019-06-19
515A2Q|1|2Small subunit ribosomal RNA18S RRNAHomo sapiensEukaryaRF01960Structure of the HCV IRES bound to the human ribosomeElectron microscopy3.916652015-07-15
526YBW|1|ASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Structure of a human 48S translational initiation complex - 40S bodyElectron microscopy3.112202020-09-16
536G4S|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State BElectron microscopy416132018-06-06
545LKS|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure-function insights reveal the human ribosome as a cancer target for antibioticsElectron microscopy3.617422017-04-26
557MQ8|1|L1Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human SSU processome, state pre-A1Electron microscopy3.613012021-09-22
567MQ9|1|L1Small subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960Cryo-EM structure of the human SSU processome, state pre-A1*Electron microscopy3.8713012021-09-22
576ZOL|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960SARS-CoV-2-Nsp1-40S complex, focused on headElectron microscopy2.84722020-07-22
585T2C|1|AASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.617422017-01-25
595A8L|1|BSmall subunit ribosomal RNAHUMAN 18S RIBOSOMAL RNAHomo sapiensEukaryaRF01960Human eRF1 and the hCMV nascent peptide in the translation termination complexElectron microscopy3.8672015-12-02

Release history

Release3.252
Date2022-10-12

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16G4S|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State BELECTRON MICROSCOPY41613
25A8L|1|BHuman eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.867
36IP8|1|2mCryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)ELECTRON MICROSCOPY3.91742
46IP5|1|2mCryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)ELECTRON MICROSCOPY3.91742
55LKS|1|S2Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.61742
64UG0|1|S2STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.61742
75T2C|1|AACryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.61742
86OLZ|1|B1Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNAELECTRON MICROSCOPY3.91708
96OLG|1|B1Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)ELECTRON MICROSCOPY3.41708
105AJ0|1|B1Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
117QP7|1|AStructure of the human 48S initiation complex in closed state (h48S AUG closed)ELECTRON MICROSCOPY3.71719
127QVP|1|S2Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY31714
136Y2L|1|S2Structure of human ribosome in POST stateELECTRON MICROSCOPY31713
146XA1|1|S2Structure of a drug-like compound stalled human translation termination complexELECTRON MICROSCOPY2.81590
156ZVH|1|2EDF1-ribosome complexELECTRON MICROSCOPY2.91740
166QZP|1|S2High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91740
176Z6N|1|S2Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.91740
186Z6L|1|S2Cryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY31740
196ZMO|1|S2SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.11740
206ZMI|1|S2SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.61740
216ZM7|1|S2SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.71740
226ZME|1|S2SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY31740
236ZN5|1|2SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complex - state 2ELECTRON MICROSCOPY3.21671
247TQL|1|2CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.ELECTRON MICROSCOPY3.41656
256Y0G|1|S2Structure of human ribosome in classical-PRE stateELECTRON MICROSCOPY3.21697
267QVP|1|S3Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY31705
276Y57|1|S2Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.51658
286OLF|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAsELECTRON MICROSCOPY3.91714
296OLE|1|S2Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11714
306OLI|1|S2Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)ELECTRON MICROSCOPY3.51714
316ZXG|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1ELECTRON MICROSCOPY2.61651
326ZXH|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State H2ELECTRON MICROSCOPY2.71651
336ZXF|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State GELECTRON MICROSCOPY3.71656
346ZV6|1|2Human RIO1(kd)-StHA late pre-40S particle, structural state B (post 18S rRNA cleavage)ELECTRON MICROSCOPY2.91683
356G5H|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureELECTRON MICROSCOPY3.61665
366ZMW|1|AStructure of a human 48S translational initiation complexELECTRON MICROSCOPY3.71719
376YBW|1|AStructure of a human 48S translational initiation complex - 40S bodyELECTRON MICROSCOPY3.11220
386Z6M|1|S2Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1ELECTRON MICROSCOPY3.11740
396ZVJ|1|2Structure of a human ABCE1-bound 43S pre-initiation complex - State IIELECTRON MICROSCOPY3.81720
406ZON|1|2SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1ELECTRON MICROSCOPY31721
415A2Q|1|2Structure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.91665
426ZOK|1|2SARS-CoV-2-Nsp1-40S complex, focused on bodyELECTRON MICROSCOPY2.81232
436ZOJ|1|2SARS-CoV-2-Nsp1-40S complex, composite mapELECTRON MICROSCOPY2.81704
446ZOL|1|2SARS-CoV-2-Nsp1-40S complex, focused on headELECTRON MICROSCOPY2.8472
456ZLW|1|2SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunitELECTRON MICROSCOPY2.61665
467K5I|1|2SARS-COV-2 nsp1 in complex with human 40S ribosomeELECTRON MICROSCOPY2.91665
476ZP4|1|2SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.91721
487A09|1|2Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIELECTRON MICROSCOPY3.51721
496ZMT|1|2SARS-CoV-2 Nsp1 bound to a pre-40S-like ribosome complexELECTRON MICROSCOPY31569
506ZXD|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State F1ELECTRON MICROSCOPY3.21645
516ZUO|1|2Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)ELECTRON MICROSCOPY3.11665
526G5I|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.51657
536ZXE|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State F2ELECTRON MICROSCOPY31645
546G18|1|2Cryo-EM structure of a late human pre-40S ribosomal subunit - State CELECTRON MICROSCOPY3.61658
556OM7|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAsELECTRON MICROSCOPY3.71714
566OM0|1|S2Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAsELECTRON MICROSCOPY3.11714
577MQA|1|L1Cryo-EM structure of the human SSU processome, state post-A1ELECTRON MICROSCOPY2.71570
587MQ9|1|L1Cryo-EM structure of the human SSU processome, state pre-A1*ELECTRON MICROSCOPY3.871301
597MQ8|1|L1Cryo-EM structure of the human SSU processome, state pre-A1ELECTRON MICROSCOPY3.61301

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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