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Equivalence class NR_4.0_51266.5 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
12C4Q|1|R (rep)5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.38172005-11-07
22C4Y|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.68172006-01-05
32C4Q|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.38172005-11-07
42BU1|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.2172005-08-18
52C4Y|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.68132006-01-05
62IZ8|1|RRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2MS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.3162006-07-27
72C4Z|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.6172006-01-05
82BU1|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.2172005-08-18
92C51|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.8152006-01-05
102C4Z|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.6132006-01-05
112C50|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.65142006-01-05
122C51|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.8132006-01-05
132IZ8|1|SRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2MS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.3132006-07-27
142C50|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.65132006-01-05
151ZDH|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.7131997-04-21
161ZDH|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.7131997-04-21
172BQ5|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.91192006-03-22
182BNY|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2 (N87A mutant) - RNA hairpin complexX-ray diffraction3152006-03-22
192BQ5|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.91172006-03-22
202BNY|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2 (N87A mutant) - RNA hairpin complexX-ray diffraction3132006-03-22
211AQ4|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction3161997-12-24
221AQ3|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.8161997-12-24
231AQ3|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.8121997-12-24
241AQ4|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction3141997-12-24
252IZM|1|R5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.7132007-07-03
262IZM|1|S5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2MS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.7132007-07-03
271ZDI|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.7161997-04-21
282B2E|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.15162006-05-09
292B2G|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.02162006-05-09
301ZDK|1|RRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.86191998-12-07
311ZDK|1|SRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.86191998-12-07
321ZDI|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.7131997-04-21
332B2E|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.15142006-05-09
342B2G|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.02152006-05-09

Release history

Release3.3783.3793.3803.3813.3823.3833.384
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
12BQ5|1|RMS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9119
22C4Y|1|RMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6817
32C4Z|1|RMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.617
42IZM|1|RMS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
52IZM|1|SMS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
62IZ8|1|SMS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.313
72IZ8|1|RMS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.316
82C4Q|1|RMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3817
92BU1|1|RMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.217
102BU1|1|SMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.217
112C4Q|1|SMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3817
122C50|1|SMS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6513
132C51|1|SMS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.813
142BNY|1|RMS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION315
152C51|1|RMS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.815
162C50|1|RMS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6514
171AQ3|1|RBACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.816
181AQ4|1|RSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION316
191ZDI|1|RRNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.716
201ZDH|1|RMS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
211ZDK|1|RSTRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
221ZDH|1|SMS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
231ZDK|1|SSTRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
241AQ4|1|SSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION314
251AQ3|1|SBACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.812
261ZDI|1|SRNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
272B2G|1|RMS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0216
282BNY|1|SMS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION313
292C4Z|1|SMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.613
302C4Y|1|SMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6813
312BQ5|1|SMS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9117
322B2G|1|SMS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0215
332B2E|1|RRNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1516
342B2E|1|SRNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1514

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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