#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17O1A|1|B8 (rep)Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
27O1C|1|B8Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanElectron microscopy2.62021-09-01
37O19|1|B8Transfer RNAmRNA, P-site tRNA-ProEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanElectron microscopy2.92021-09-01
46SZS|1|xTransfer RNAmRNA, P-site tRNA-Pro(CGG)Escherichia coliBacteriaRF00005Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisElectron microscopy3.062019-12-04
55MGP|1|xTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsElectron microscopy3.12016-12-14
66ENU|1|xTransfer RNAmRNA, Proline tRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)Electron microscopy3.12017-11-22
76ENF|1|xTransfer RNAproline tRNA, RNA (5'-R(P*CP*CP*G)-3'), mRNAEscherichia coliBacteriaRF00005Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PElectron microscopy3.22017-11-22
86NUO|1|XVTransfer RNAmRNA, P-site tRNA-ProEscherichia coliBacteriaRF00005Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.22020-10-14
96NUO|1|QVTransfer RNAmRNA, P-site tRNA-ProEscherichia coliBacteriaRF00005Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.22020-10-14
106ENJ|1|xTransfer RNAmRNA, Proline tRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.72017-11-22
116ENJ|1|9Transfer RNAProline tRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.72017-11-22
126O3M|1|QVTransfer RNAmRNA, P-site ASLProEscherichia coliBacteriaRF00005Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.972020-10-14
136O3M|1|XVTransfer RNAmRNA, P-site ASLProEscherichia coliBacteriaRF00005Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.972020-10-14

Release history

Release3.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.207
Date2021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-01

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_56101.2NR_4.0_56101.13.194(10) 5MGP|1|x, 6ENF|1|x, 6ENJ|1|9, 6ENJ|1|x, 6ENU|1|x, 6NUO|1|QV, 6NUO|1|XV, 6O3M|1|QV, 6O3M|1|XV, 6SZS|1|x(3) 7O19|1|B8, 7O1A|1|B8, 7O1C|1|B8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_56101.2NR_4.0_56101.33.208(13) 5MGP|1|x, 6ENF|1|x, 6ENJ|1|9, 6ENJ|1|x, 6ENU|1|x, 6NUO|1|QV, 6NUO|1|XV, 6O3M|1|QV, 6O3M|1|XV, 6SZS|1|x, 7O19|1|B8, 7O1A|1|B8, 7O1C|1|B8(0) (1) 7CPJ|1|9

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16NUO|1|QVModified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.276
26O3M|1|QVUnmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.9777
36O3M|1|XVUnmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.9777
46NUO|1|XVModified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.276
56SZS|1|xRelease factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisELECTRON MICROSCOPY3.0677
65MGP|1|xStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.177
77O1A|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.474
87O1C|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.677
97O19|1|B8Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.977
106ENF|1|xCryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.277
116ENU|1|xPolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.177
126ENJ|1|xPolyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.777
136ENJ|1|9Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.777

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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