Equivalence class NR_4.0_66484.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3HHN|1|E (rep) | Class I ligase ribozyme, self-ligation product | Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD | X-ray diffraction | 2.99 | 2009-11-24 | ||||
| 2 | 3IVK|1|C | class I ligase product | Crystal Structure of the Catalytic Core of an RNA Polymerase Ribozyme Complexed with an Antigen Binding Antibody Fragment | X-ray diffraction | 3.1 | 2010-03-02 | ||||
| 3 | 3IVK|1|M | class I ligase product | Crystal Structure of the Catalytic Core of an RNA Polymerase Ribozyme Complexed with an Antigen Binding Antibody Fragment | X-ray diffraction | 3.1 | 2010-03-02 | ||||
| 4 | 3HHN|1|C | Class I ligase ribozyme, self-ligation product | Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD | X-ray diffraction | 2.99 | 2009-11-24 | ||||
| 5 | 3R1L|1|F | 5'-R(*UP*CP*CP*AP*GP*UP*A)-3', Class I ligase ribozyme | Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Mg2+ bound | X-ray diffraction | 3.12 | 2011-08-31 | ||||
| 6 | 3R1H|1|F | 5'-R(*UP*CP*CP*AP*GP*UP*A)-3', Class I ligase ribozyme | Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Ca2+ bound | X-ray diffraction | 3.15 | 2011-08-31 | ||||
| 7 | 3R1H|1|C | 5'-R(*UP*CP*CP*AP*GP*UP*A)-3', Class I ligase ribozyme | Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Ca2+ bound | X-ray diffraction | 3.15 | 2011-08-31 | ||||
| 8 | 3R1L|1|C | 5'-R(*UP*CP*CP*AP*GP*UP*A)-3', Class I ligase ribozyme | Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Mg2+ bound | X-ray diffraction | 3.12 | 2011-08-31 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
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| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_66484.1 | NR_4.0_58564.1 | 2.93 | (2) 3IVK|1|C, 3IVK|1|M | (6) 3HHN|1|C, 3HHN|1|E, 3R1H|1|C, 3R1H|1|F, 3R1L|1|C, 3R1L|1|F | (0) |
| NR_4.0_66484.1 | NR_4.0_66484.2 | 2.93 | (6) 3HHN|1|C, 3HHN|1|E, 3R1H|1|C, 3R1H|1|F, 3R1L|1|C, 3R1L|1|F | (2) 3IVK|1|C, 3IVK|1|M | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3R1H|1|C | Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Ca2+ bound | X-RAY DIFFRACTION | 3.15 | 128 | |
| 2 | 3HHN|1|C | Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD | X-RAY DIFFRACTION | 2.99 | 136 | |
| 3 | 3R1L|1|C | Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Mg2+ bound | X-RAY DIFFRACTION | 3.12 | 128 | |
| 4 | 3HHN|1|E | Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD | X-RAY DIFFRACTION | 2.99 | 136 | |
| 5 | 3R1L|1|F | Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Mg2+ bound | X-RAY DIFFRACTION | 3.12 | 128 | |
| 6 | 3R1H|1|F | Crystal structure of the Class I ligase ribozyme-substrate preligation complex, C47U mutant, Ca2+ bound | X-RAY DIFFRACTION | 3.15 | 128 | |
| 7 | 3IVK|1|M | Crystal Structure of the Catalytic Core of an RNA Polymerase Ribozyme Complexed with an Antigen Binding Antibody Fragment | X-RAY DIFFRACTION | 3.1 | 130 | |
| 8 | 3IVK|1|C | Crystal Structure of the Catalytic Core of an RNA Polymerase Ribozyme Complexed with an Antigen Binding Antibody Fragment | X-RAY DIFFRACTION | 3.1 | 130 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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