Equivalence class NR_4.0_77343.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7SYW|1|i (rep) | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | Electron microscopy | 3.7 | 2022-07-13 |
| 2 | 7SYX|1|i | Transfer RNA | Met-tRNA-i-Met | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | Electron microscopy | 3.7 | 2022-07-13 |
| 3 | 6HCJ|1|33 | Transfer RNA | mRNA, P/E tRNA | Oryctolagus cuniculus | Eukarya | RF00005 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | Electron microscopy | 3.8 | 2018-10-17 |
Release history
| Release | 3.239 |
|---|---|
| Date | 2022-07-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_77343.1 | NR_4.0_79851.1 | 3.239 | (1) 6HCJ|1|33 | (2) 7SYW|1|i, 7SYX|1|i | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7SYW|1|i | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | ELECTRON MICROSCOPY | 3.7 | 75 | |
| 2 | 7SYX|1|i | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | ELECTRON MICROSCOPY | 3.7 | 75 | |
| 3 | 6HCJ|1|33 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 75 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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