Equivalence class NR_4.0_79496.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5HR7|1|D (rep) | Transfer RNA | tRNA Glu | Escherichia coli | Bacteria | RF00005 | X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA | X-ray diffraction | 2.4 | 2016-04-13 |
| 2 | 5HR7|1|C | Transfer RNA | tRNA Glu | Escherichia coli | Bacteria | RF00005 | X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA | X-ray diffraction | 2.4 | 2016-04-13 |
| 3 | 2DER|1|D | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-ray diffraction | 3.1 | 2006-08-15 | ||||
| 4 | 2DER|1|C | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-ray diffraction | 3.1 | 2006-08-15 | ||||
| 5 | 2DET|1|C | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state | X-ray diffraction | 3.4 | 2006-08-15 | ||||
| 6 | 2DEU|1|C | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-ray diffraction | 3.4 | 2006-08-15 | ||||
| 7 | 2DEU|1|D | tRNA | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-ray diffraction | 3.4 | 2006-08-15 |
Release history
| Release | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_79496.2 | NR_4.0_42502.1 | 2.93 | (2) 5HR7|1|C, 5HR7|1|D | (5) 2DER|1|C, 2DER|1|D, 2DET|1|C, 2DEU|1|C, 2DEU|1|D | (0) |
| NR_4.0_79496.2 | NR_4.0_79496.3 | 2.93 | (5) 2DER|1|C, 2DER|1|D, 2DET|1|C, 2DEU|1|C, 2DEU|1|D | (2) 5HR7|1|C, 5HR7|1|D | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 2DER|1|D | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-RAY DIFFRACTION | 3.1 | 71 | |
| 2 | 2DET|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the pre-reaction state | X-RAY DIFFRACTION | 3.4 | 70 | |
| 3 | 2DEU|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-RAY DIFFRACTION | 3.4 | 74 | |
| 4 | 2DEU|1|D | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the adenylated intermediate state | X-RAY DIFFRACTION | 3.4 | 74 | |
| 5 | 2DER|1|C | Cocrystal structure of an RNA sulfuration enzyme MnmA and tRNA-Glu in the initial tRNA binding state | X-RAY DIFFRACTION | 3.1 | 74 | |
| 6 | 5HR7|1|C | X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA | X-RAY DIFFRACTION | 2.4 | 70 | |
| 7 | 5HR7|1|D | X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA | X-RAY DIFFRACTION | 2.4 | 70 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: