#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18RDU|1|1 (rep)sgRNAScytonema hofmanniiConformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite mapElectron microscopy2.32024-06-19
28RKT|1|1sgRNAScytonema hofmanniiConformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement mapElectron microscopy2.352024-06-19
38AXA|1|BsgRNAScytonema hofmanniiCryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon)Electron microscopy2.962024-04-10
48AXB|1|BsgRNAScytonema hofmanniiCryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon)Electron microscopy2.872024-04-10
57PLA|1|BsgRNAScytonema hofmanniiCryo-EM structure of ShCas12k in complex with a sgRNA and a dsDNA targetElectron microscopy3.042021-12-01
68BD5|1|BsgRNAScytonema hofmanniiCas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complexElectron microscopy3.32022-12-28
77N3P|1|BSingle guide RNAScytonema hofmanniiCryo-EM structure of the Cas12k-sgRNA-dsDNA complexElectron microscopy3.652021-09-01
87N3O|1|BSingle guide RNAScytonema hofmanniiCryo-EM structure of the Cas12k-sgRNA complexElectron microscopy3.82021-09-01

Release history

Release3.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.356
Date2024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
18RDU|1|1Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite mapELECTRON MICROSCOPY2.3246
28RKT|1|1Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement mapELECTRON MICROSCOPY2.35246
38BD5|1|BCas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complexELECTRON MICROSCOPY3.3246
47PLA|1|BCryo-EM structure of ShCas12k in complex with a sgRNA and a dsDNA targetELECTRON MICROSCOPY3.04217
58AXA|1|BCryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon)ELECTRON MICROSCOPY2.96235
68AXB|1|BCryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon)ELECTRON MICROSCOPY2.87230
77N3O|1|BCryo-EM structure of the Cas12k-sgRNA complexELECTRON MICROSCOPY3.8222
87N3P|1|BCryo-EM structure of the Cas12k-sgRNA-dsDNA complexELECTRON MICROSCOPY3.65229

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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