RNA 3D Hub //

Equivalence class NR_4.0_90633.20 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14WF9|1|X (rep)Large subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-ray diffraction3.432015-10-21
25HL7|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-ray diffraction3.552016-12-21
34WFA|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-ray diffraction3.392015-10-21
45HKV|1|XLarge subunit ribosomal RNA23s ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-ray diffraction3.662017-05-03
54WCE|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureusX-ray diffraction3.532015-10-21
64WFB|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-ray diffraction3.432015-10-21
75NRG|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-ray diffraction3.442017-08-09
86S0Z|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.32019-08-21
97ASM|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 50S after 30 minutes incubation at 37CElectron microscopy2.482021-11-17
106HMA|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitElectron microscopy2.652018-11-14
116S0X|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.422019-08-21
125NGM|1|AALarge subunit ribosomal RNA23S Ribosomal RNAStaphylococcus aureusBacteriaRF025412.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
137NHL|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF02541VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
147ASP|1|YLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.862021-11-17
157NHM|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0254170S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
167P48|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Staphylococcus aureus ribosome in complex with Sal(B)Electron microscopy2.92022-02-02
177ASN|1|ALarge subunit ribosomal RNA23SStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 50S after 30 minutes incubation a 37CElectron microscopy2.732021-11-17
186YEF|1|ALarge subunit ribosomal RNA23S rRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0254170S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.22021-01-27
196WQN|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolidElectron microscopy2.92020-06-03
207ASO|1|YLarge subunit ribosomal RNA23SStaphylococcus aureusBacteriaRF02541Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.112021-11-17
216WQQ|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolidElectron microscopy3.12020-06-03
226WRU|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolidElectron microscopy3.12020-06-03
236WRS|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolidElectron microscopy3.22020-06-03
246DDG|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6Electron microscopy3.12019-03-20
256DDD|1|1Large subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5Electron microscopy3.12019-03-20
266S12|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).Electron microscopy3.22019-08-21
276SJ6|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureusElectron microscopy3.232020-04-08
285T7V|1|BLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.62017-05-31
295ND8|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.72017-06-28
305ND9|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.72017-06-28
315LI0|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF0254170S ribosome from Staphylococcus aureusElectron microscopy3.82016-12-28
325TCU|1|BLarge subunit ribosomal RNA23S RRNAStaphylococcus aureusBacteriaRF02541Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.92017-05-24
336S13|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).Electron microscopy3.582019-08-21

Release history

Release3.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.237
Date2022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_90633.20NR_4.0_90633.193.216(32) 4WCE|1|X, 4WF9|1|X, 4WFA|1|X, 4WFB|1|X, 5HKV|1|X, 5HL7|1|X, 5LI0|1|A, 5ND8|1|A, 5ND9|1|A, 5NGM|1|AA, 5NRG|1|X, 5T7V|1|B, 5TCU|1|B, 6DDD|1|1, 6DDG|1|1, 6HMA|1|A, 6S0X|1|A, 6S0Z|1|A, 6S12|1|A, 6S13|1|A, 6SJ6|1|A, 6WQN|1|1, 6WQQ|1|1, 6WRS|1|1, 6WRU|1|1, 6YEF|1|A, 7ASM|1|A, 7ASN|1|A, 7ASO|1|Y, 7ASP|1|Y, 7NHL|1|A, 7NHM|1|A(1) 7P48|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_90633.20NR_4.0_90633.213.238(33) 4WCE|1|X, 4WF9|1|X, 4WFA|1|X, 4WFB|1|X, 5HKV|1|X, 5HL7|1|X, 5LI0|1|A, 5ND8|1|A, 5ND9|1|A, 5NGM|1|AA, 5NRG|1|X, 5T7V|1|B, 5TCU|1|B, 6DDD|1|1, 6DDG|1|1, 6HMA|1|A, 6S0X|1|A, 6S0Z|1|A, 6S12|1|A, 6S13|1|A, 6SJ6|1|A, 6WQN|1|1, 6WQQ|1|1, 6WRS|1|1, 6WRU|1|1, 6YEF|1|A, 7ASM|1|A, 7ASN|1|A, 7ASO|1|Y, 7ASP|1|Y, 7NHL|1|A, 7NHM|1|A, 7P48|1|A(0) (2) 7TTU|1|1, 7TTW|1|1

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17ASN|1|AStaphylococcus aureus 50S after 30 minutes incubation a 37CELECTRON MICROSCOPY2.732739
26SJ6|1|ACryo-EM structure of 50S-RsfS complex from Staphylococcus aureusELECTRON MICROSCOPY3.232585
36HMA|1|AImproved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunitELECTRON MICROSCOPY2.652831
47ASM|1|AStaphylococcus aureus 50S after 30 minutes incubation at 37CELECTRON MICROSCOPY2.482831
55NGM|1|AA2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.92905
65NRG|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.442711
75HKV|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-RAY DIFFRACTION3.662695
84WCE|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureusX-RAY DIFFRACTION3.532708
95HL7|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-RAY DIFFRACTION3.552705
104WFA|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.392711
114WF9|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.432712
124WFB|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.432707
136DDG|1|1Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6ELECTRON MICROSCOPY3.12646
146DDD|1|1Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5ELECTRON MICROSCOPY3.12646
155ND9|1|AHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.72914
165ND8|1|AHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.72912
175LI0|1|A70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.82914
187NHM|1|A70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.12824
197NHL|1|AVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.12914
207P48|1|AStaphylococcus aureus ribosome in complex with Sal(B)ELECTRON MICROSCOPY2.92661
216YEF|1|A70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.22875
225TCU|1|BMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.92755
235T7V|1|BMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.62768
246WRU|1|1Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with an isomer of the tedizolidELECTRON MICROSCOPY3.12665
256WRS|1|1Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolidELECTRON MICROSCOPY3.22698
266WQQ|1|1Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolidELECTRON MICROSCOPY3.12698
276WQN|1|1Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolidELECTRON MICROSCOPY2.92687
287ASO|1|YStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.112720
296S0Z|1|AErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.32905
306S0X|1|AErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.422905
316S12|1|AErythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.22905
326S13|1|AErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).ELECTRON MICROSCOPY3.582905
337ASP|1|YStaphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.862723

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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