Equivalence class NR_4.0_91124.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5NEP|1|A (rep) | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with methylguanidine | X-ray diffraction | 1.6 | 18 | 2017-05-31 | |||
| 2 | 5NEX|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine | X-ray diffraction | 1.72 | 18 | 2017-05-31 | |||
| 3 | 5NEO|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop | X-ray diffraction | 1.69 | 18 | 2017-05-31 | |||
| 4 | 5NEQ|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with aminoguanidine | X-ray diffraction | 1.69 | 18 | 2017-05-31 | |||
| 5 | 5NEF|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine | X-ray diffraction | 1.91 | 18 | 2017-06-07 | |||
| 6 | 5NOM|1|A | RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3') | Gloeobacter violaceus | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine | X-ray diffraction | 1.93 | 18 | 2017-05-31 |
Release history
| Release | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 |
Parents
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5NEX|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine | X-RAY DIFFRACTION | 1.72 | 18 | |
| 2 | 5NOM|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine | X-RAY DIFFRACTION | 1.93 | 18 | |
| 3 | 5NEF|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine | X-RAY DIFFRACTION | 1.91 | 18 | |
| 4 | 5NEP|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with methylguanidine | X-RAY DIFFRACTION | 1.6 | 18 | |
| 5 | 5NEQ|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with aminoguanidine | X-RAY DIFFRACTION | 1.69 | 18 | |
| 6 | 5NEO|1|A | The structure of the G. violaceus guanidine II riboswitch P1 stem-loop | X-RAY DIFFRACTION | 1.69 | 18 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: