Equivalence class NR_4.0_93855.11 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QI4|1|AA (rep) | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome at 2.2 A resolution | Electron microscopy | 2.21 | 2022-07-13 |
| 2 | 7P2E|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin | Electron microscopy | 2.4 | 2022-07-27 |
| 3 | 6ZM6|1|AA | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | Electron microscopy | 2.59 | 2021-01-13 |
| 4 | 7PNX|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a | Electron microscopy | 2.76 | 2022-06-15 |
| 5 | 6ZM5|1|AA | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | Electron microscopy | 2.89 | 2021-01-13 |
| 6 | 6VMI|1|AA | Small subunit ribosomal RNA | 12s rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | Electron microscopy | 2.96 | 2020-08-05 |
| 7 | 7PO3|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome small subunit | Electron microscopy | 2.92 | 2022-06-15 |
| 8 | 7PO1|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Initiation complex of human mitochondrial ribosome small subunit with IF3 | Electron microscopy | 2.92 | 2022-06-15 |
| 9 | 7PO0|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3 | Electron microscopy | 2.9 | 2022-06-15 |
| 10 | 6VLZ|1|AA | Small subunit ribosomal RNA | 12s rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | Electron microscopy | 2.97 | 2020-08-05 |
| 11 | 6RW4|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3 | Electron microscopy | 2.97 | 2020-06-03 |
| 12 | 7PO2|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA | Electron microscopy | 3.09 | 2022-06-15 |
| 13 | 7PNY|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b | Electron microscopy | 3.06 | 2022-06-15 |
| 14 | 7PNZ|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c | Electron microscopy | 3.09 | 2022-06-15 |
| 15 | 6RW5|1|A | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3 | Electron microscopy | 3.14 | 2020-06-03 |
| 16 | 7L08|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | Electron microscopy | 3.49 | 2021-05-12 |
| 17 | 7A5I|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | Electron microscopy | 3.7 | 2020-12-23 |
| 18 | 7A5K|1|A6 | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | Electron microscopy | 3.7 | 2020-12-23 |
| 19 | 6ZSC|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with E-site tRNA | Electron microscopy | 3.5 | 2020-09-16 |
| 20 | 6ZSD|1|AA | Small subunit ribosomal RNA | 12SrRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | Electron microscopy | 3.7 | 2020-09-16 |
| 21 | 3J9M|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2015-04-15 |
| 22 | 7OG4|1|AA | Small subunit ribosomal RNA | 12S mitochondrial rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with P/E-tRNA | Electron microscopy | 3.8 | 2021-06-23 |
| 23 | 6ZSA|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | Electron microscopy | 4 | 2020-10-21 |
| 24 | 6ZSG|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | Electron microscopy | 4 | 2020-10-14 |
| 25 | 6ZS9|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Human mitochondrial ribosome in complex with ribosome recycling factor | Electron microscopy | 4 | 2020-10-14 |
| 26 | 6NU2|1|AA | Small subunit ribosomal RNA | 12S rRNA | Homo sapiens | Mitochondria | RF00177 | Structural insights into unique features of the human mitochondrial ribosome recycling | Electron microscopy | 3.9 | 2019-04-17 |
Release history
| Release | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_93855.11 | NR_4.0_93855.10 | 3.241 | (25) 3J9M|1|AA, 6NU2|1|AA, 6RW4|1|A, 6RW5|1|A, 6VLZ|1|AA, 6VMI|1|AA, 6ZM5|1|AA, 6ZM6|1|AA, 6ZS9|1|AA, 6ZSA|1|AA, 6ZSC|1|AA, 6ZSD|1|AA, 6ZSG|1|AA, 7A5I|1|A6, 7A5K|1|A6, 7L08|1|AA, 7OG4|1|AA, 7PNX|1|A, 7PNY|1|A, 7PNZ|1|A, 7PO0|1|A, 7PO1|1|A, 7PO2|1|A, 7PO3|1|A, 7QI4|1|AA | (1) 7P2E|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_93855.11 | NR_4.0_93855.12 | 3.261 | (26) 3J9M|1|AA, 6NU2|1|AA, 6RW4|1|A, 6RW5|1|A, 6VLZ|1|AA, 6VMI|1|AA, 6ZM5|1|AA, 6ZM6|1|AA, 6ZS9|1|AA, 6ZSA|1|AA, 6ZSC|1|AA, 6ZSD|1|AA, 6ZSG|1|AA, 7A5I|1|A6, 7A5K|1|A6, 7L08|1|AA, 7OG4|1|AA, 7P2E|1|A, 7PNX|1|A, 7PNY|1|A, 7PNZ|1|A, 7PO0|1|A, 7PO1|1|A, 7PO2|1|A, 7PO3|1|A, 7QI4|1|AA | (0) | (6) 8CSP|1|A, 8CSQ|1|A, 8CSR|1|A, 8CSS|1|A, 8CST|1|A, 8CSU|1|A |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6NU2|1|AA | Structural insights into unique features of the human mitochondrial ribosome recycling | ELECTRON MICROSCOPY | 3.9 | 923 | |
| 2 | 6VLZ|1|AA | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 944 | |
| 3 | 6VMI|1|AA | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 944 | |
| 4 | 7L08|1|AA | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | ELECTRON MICROSCOPY | 3.49 | 944 | |
| 5 | 3J9M|1|AA | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 923 | |
| 6 | 7A5I|1|A6 | Structure of the human mitoribosome with A- P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.7 | 928 | |
| 7 | 7A5K|1|A6 | Structure of the human mitoribosome in the post translocation state bound to mtEF-G1 | ELECTRON MICROSCOPY | 3.7 | 928 | |
| 8 | 6ZS9|1|AA | Human mitochondrial ribosome in complex with ribosome recycling factor | ELECTRON MICROSCOPY | 4 | 927 | |
| 9 | 7OG4|1|AA | Human mitochondrial ribosome in complex with P/E-tRNA | ELECTRON MICROSCOPY | 3.8 | 924 | |
| 10 | 6ZSC|1|AA | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 927 | |
| 11 | 6ZSD|1|AA | Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 3.7 | 927 | |
| 12 | 6ZSA|1|AA | Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA | ELECTRON MICROSCOPY | 4 | 927 | |
| 13 | 6ZSG|1|AA | Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA | ELECTRON MICROSCOPY | 4 | 927 | |
| 14 | 7QI4|1|AA | Human mitochondrial ribosome at 2.2 A resolution | ELECTRON MICROSCOPY | 2.21 | 949 | |
| 15 | 6ZM6|1|AA | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 954 | |
| 16 | 6ZM5|1|AA | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 954 | |
| 17 | 7PO2|1|A | Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNA | ELECTRON MICROSCOPY | 3.09 | 950 | |
| 18 | 7PO3|1|A | Human mitochondrial ribosome small subunit | ELECTRON MICROSCOPY | 2.92 | 950 | |
| 19 | 7PO1|1|A | Initiation complex of human mitochondrial ribosome small subunit with IF3 | ELECTRON MICROSCOPY | 2.92 | 950 | |
| 20 | 6RW5|1|A | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3 | ELECTRON MICROSCOPY | 3.14 | 950 | |
| 21 | 6RW4|1|A | Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3 | ELECTRON MICROSCOPY | 2.97 | 950 | |
| 22 | 7P2E|1|A | Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin | ELECTRON MICROSCOPY | 2.4 | 959 | |
| 23 | 7PNZ|1|A | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation c | ELECTRON MICROSCOPY | 3.09 | 946 | |
| 24 | 7PO0|1|A | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3 | ELECTRON MICROSCOPY | 2.9 | 946 | |
| 25 | 7PNX|1|A | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a | ELECTRON MICROSCOPY | 2.76 | 946 | |
| 26 | 7PNY|1|A | Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation b | ELECTRON MICROSCOPY | 3.06 | 946 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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