Equivalence class NR_4.0_94833.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6N6D|1|D (rep) | RNA (5'-R(P*AP*G)-3') | synthetic construct | Vibrio cholerae Oligoribonuclease bound to pAG | X-ray diffraction | 1.53 | 2 | 2019-06-12 | |||
| 2 | 6N6K|1|C | RNA (5'-R(P*AP*G)-3') | synthetic construct | Human REXO2 bound to pAG | X-ray diffraction | 1.42 | 2 | 2019-06-12 | |||
| 3 | 6N6K|1|D | RNA (5'-R(P*AP*G)-3') | synthetic construct | Human REXO2 bound to pAG | X-ray diffraction | 1.42 | 2 | 2019-06-12 | |||
| 4 | 3RTJ|1|D | RNA (5'-R(*AP*G)-3') | Crystal structure of ricin bound with dinucleotide ApG | X-ray diffraction | 3 | 2 | 2011-08-31 | ||||
| 5 | 1APG|1|D | RNA (5'-R(*AP*G)-3') | X-RAY ANALYSIS OF SUBSTRATE ANALOGS IN THE RICIN A-CHAIN ACTIVE SITE | X-ray diffraction | 3 | 2 | 1994-01-31 |
Release history
| Release | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 |
Parents
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 1APG|1|D | X-RAY ANALYSIS OF SUBSTRATE ANALOGS IN THE RICIN A-CHAIN ACTIVE SITE | X-RAY DIFFRACTION | 3 | 2 | |
| 2 | 6N6K|1|C | Human REXO2 bound to pAG | X-RAY DIFFRACTION | 1.42 | 2 | |
| 3 | 3RTJ|1|D | Crystal structure of ricin bound with dinucleotide ApG | X-RAY DIFFRACTION | 3 | 2 | |
| 4 | 6N6K|1|D | Human REXO2 bound to pAG | X-RAY DIFFRACTION | 1.42 | 2 | |
| 5 | 6N6D|1|D | Vibrio cholerae Oligoribonuclease bound to pAG | X-RAY DIFFRACTION | 1.53 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: