RNA 3D Hub //

Equivalence class NR_all_01315.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17B9V|1|2+ 7B9V|1|6 (rep)U2 splicesomal small nuclear RNA + U6 spliceosomal RNABranched intron and 3' exon of UBC4 pre-mRNA, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 boundElectron microscopy2.82982021-03-10
26J6G|1|L+ 6J6G|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAACT1 pre-mRNA, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromElectron microscopy3.23112019-04-24
36J6H|1|L+ 6J6H|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAACT1 pre-mRNA, U2 snRNA, U6 snRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromElectron microscopy3.63122019-04-24
45LJ3|1|Z+ 5LJ3|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAIntron of UBC4 pre-mRNA, U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA)Saccharomyces cerevisiaeEukaryaRF00004 + RF00026Structure of the core of the yeast spliceosome immediately after branchingElectron microscopy3.82682016-08-03
56J6N|1|L+ 6J6N|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromElectron microscopy3.863082019-04-24
66J6Q|1|L+ 6J6Q|1|EU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, UBC4 pre-mRNASaccharomyces cerevisiaeEukaryaRF00004 + RF00026Cryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromElectron microscopy3.73132019-04-24
75LJ5|1|Z+ 5LJ5|1|VU2 splicesomal small nuclear RNA + U6 spliceosomal RNAIntron of UBC4 pre-mRNA, U2 snRNA (small nuclear RNA), U6 snRNA (small nuclear RNA)Saccharomyces cerevisiaeEukaryaRF00004 + RF00026Overall structure of the yeast spliceosome immediately after branching.Electron microscopy102682016-08-31

Release history

Release3.3783.3793.3803.3813.3823.3833.3843.3853.3863.3873.3883.3893.3903.3913.3923.3933.394
Date2025-03-132025-03-192025-03-262025-04-022025-04-092025-04-162025-04-232025-04-302025-05-072025-05-142025-05-212025-05-282025-06-042025-06-112025-06-182025-06-252025-07-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
16J6H|1|L+ 6J6H|1|ECryo-EM structure of the yeast B*-a1 complex at an average resolution of 3.6 angstromELECTRON MICROSCOPY3.6312
26J6G|1|L+ 6J6G|1|ECryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstromELECTRON MICROSCOPY3.2311
36J6N|1|L+ 6J6N|1|ECryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstromELECTRON MICROSCOPY3.86308
46J6Q|1|L+ 6J6Q|1|ECryo-EM structure of the yeast B*-b2 complex at an average resolution of 3.7 angstromELECTRON MICROSCOPY3.7313
57B9V|1|2+ 7B9V|1|6Yeast C complex spliceosome at 2.8 Angstrom resolution with Prp18/Slu7 boundELECTRON MICROSCOPY2.8298
65LJ3|1|Z+ 5LJ3|1|VStructure of the core of the yeast spliceosome immediately after branchingELECTRON MICROSCOPY3.8268
75LJ5|1|Z+ 5LJ5|1|VOverall structure of the yeast spliceosome immediately after branching.ELECTRON MICROSCOPY10268

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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