#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12KX5|1|A (rep)HIV TAR RNARecognition of HIV TAR RNA by peptide mimetic of Tat proteinSolution NMR2010-07-07
22KDQ|1|BHIV-1 TAR RNASimultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat proteinSolution NMR2009-06-23
31UUI|1|B5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3'Human immunodeficiency virus 1NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNASolution NMR2004-02-12
42L8H|3|AHIV TAR RNAChemical probe bound to HIV TAR RNASolution NMR2011-03-23
51QD3|1|AHIV-1 TAR RNAHuman immunodeficiency virus 1HIV-1 TAR RNA/NEOMYCIN B COMPLEXSolution NMR2000-07-12
61UUD|1|BRNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')Human immunodeficiency virus 1NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNASolution NMR2004-03-15
71UTS|2|BRNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')Human immunodeficiency virus 1Designed HIV-1 TAR Binding LigandSolution NMR2004-02-12
81ARJ|7|NTAR RNAARG-BOUND TAR RNA, NMRSolution NMR1996-11-08
91ANR|2|ARNA REGULATORY ELEMENT TARCIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURESSolution NMR1997-01-11

Release history

Release2.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.78
Date2015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_03265.2NR_all_03265.12.46(8) 1ANR|2|A, 1ARJ|7|N, 1UTS|2|B, 1UUD|1|B, 1UUI|1|B, 2KDQ|1|B, 2KX5|1|A, 2L8H|3|A(1) 1QD3|1|A(0)
NR_all_03265.2NR_all_70188.12.46(1) 1QD3|1|A(8) 1ANR|2|A, 1ARJ|7|N, 1UTS|2|B, 1UUD|1|B, 1UUI|1|B, 2KDQ|1|B, 2KX5|1|A, 2L8H|3|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_03265.2NR_all_03265.32.79(9) 1ANR|2|A, 1ARJ|7|N, 1QD3|1|A, 1UTS|2|B, 1UUD|1|B, 1UUI|1|B, 2KDQ|1|B, 2KX5|1|A, 2L8H|3|A(0) (3) 5J0M|1|B, 5J1O|2|B, 5J2W|1|B

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
11UTS|2|BDesigned HIV-1 TAR Binding LigandSOLUTION NMR29
21UUI|1|BNMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNASOLUTION NMR29
31UUD|1|BNMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNASOLUTION NMR29
41ARJ|7|NARG-BOUND TAR RNA, NMRSOLUTION NMR29
52KDQ|1|BSimultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat proteinSOLUTION NMR29
62KX5|1|ARecognition of HIV TAR RNA by peptide mimetic of Tat proteinSOLUTION NMR29
72L8H|3|AChemical probe bound to HIV TAR RNASOLUTION NMR29
81QD3|1|AHIV-1 TAR RNA/NEOMYCIN B COMPLEXSOLUTION NMR29
91ANR|2|ACIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURESSOLUTION NMR29

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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