Equivalence class NR_all_03265.2 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2KX5|1|A (rep) | HIV TAR RNA | Recognition of HIV TAR RNA by peptide mimetic of Tat protein | Solution NMR | 2010-07-07 | |||||
2 | 2KDQ|1|B | HIV-1 TAR RNA | Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat protein | Solution NMR | 2009-06-23 | |||||
3 | 1UUI|1|B | 5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3' | Human immunodeficiency virus 1 | NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA | Solution NMR | 2004-02-12 | ||||
4 | 2L8H|3|A | HIV TAR RNA | Chemical probe bound to HIV TAR RNA | Solution NMR | 2011-03-23 | |||||
5 | 1QD3|1|A | HIV-1 TAR RNA | Human immunodeficiency virus 1 | HIV-1 TAR RNA/NEOMYCIN B COMPLEX | Solution NMR | 2000-07-12 | ||||
6 | 1UUD|1|B | RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3') | Human immunodeficiency virus 1 | NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA | Solution NMR | 2004-03-15 | ||||
7 | 1UTS|2|B | RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3') | Human immunodeficiency virus 1 | Designed HIV-1 TAR Binding Ligand | Solution NMR | 2004-02-12 | ||||
8 | 1ARJ|7|N | TAR RNA | ARG-BOUND TAR RNA, NMR | Solution NMR | 1996-11-08 | |||||
9 | 1ANR|2|A | RNA REGULATORY ELEMENT TAR | CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES | Solution NMR | 1997-01-11 |
Release history
Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_all_03265.2 | NR_all_03265.1 | 2.46 | (8) 1ANR|2|A, 1ARJ|7|N, 1UTS|2|B, 1UUD|1|B, 1UUI|1|B, 2KDQ|1|B, 2KX5|1|A, 2L8H|3|A | (1) 1QD3|1|A | (0) |
NR_all_03265.2 | NR_all_70188.1 | 2.46 | (1) 1QD3|1|A | (8) 1ANR|2|A, 1ARJ|7|N, 1UTS|2|B, 1UUD|1|B, 1UUI|1|B, 2KDQ|1|B, 2KX5|1|A, 2L8H|3|A | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
#S | View | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|---|
1 | 1UTS|2|B | Designed HIV-1 TAR Binding Ligand | SOLUTION NMR | 29 | ||
2 | 1UUI|1|B | NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA | SOLUTION NMR | 29 | ||
3 | 1UUD|1|B | NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA | SOLUTION NMR | 29 | ||
4 | 1ARJ|7|N | ARG-BOUND TAR RNA, NMR | SOLUTION NMR | 29 | ||
5 | 2KDQ|1|B | Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat protein | SOLUTION NMR | 29 | ||
6 | 2KX5|1|A | Recognition of HIV TAR RNA by peptide mimetic of Tat protein | SOLUTION NMR | 29 | ||
7 | 2L8H|3|A | Chemical probe bound to HIV TAR RNA | SOLUTION NMR | 29 | ||
8 | 1QD3|1|A | HIV-1 TAR RNA/NEOMYCIN B COMPLEX | SOLUTION NMR | 29 | ||
9 | 1ANR|2|A | CIS-ACTING RNA REGULATORY ELEMENT (HIV-1 TAR), NMR, 20 STRUCTURES | SOLUTION NMR | 29 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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