Equivalence class NR_all_09297.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O5B|1|U (rep) | Transfer RNA | mRNA, tRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | Electron microscopy | 3.33 | 2022-02-02 |
| 2 | 8QPP|1|U | Transfer RNA | tRNA (77-MER) | Bacillus subtilis | Bacteria | RF00005 | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | Electron microscopy | 3.4 | 2023-12-27 |
| 3 | 7QV1|1|H | Transfer RNA | mRNA, P-site tRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis collided disome (Leading 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 4 | 7QV2|1|H | Transfer RNA | A/P-site tRNA, mRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis collided disome (Collided 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 5 | 7QV2|1|x | Transfer RNA | mRNA, P/E-site tRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis collided disome (Collided 70S) | Electron microscopy | 3.5 | 2022-03-09 |
| 6 | 8R55|1|U | Transfer RNA | tRNA (77-MER) | Bacillus subtilis | Bacteria | RF00005 | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | Electron microscopy | 3.57 | 2024-01-17 |
| 7 | 3J9W|1|AX | Transfer RNA | mRNA, tRNA-Asp | Bacillus subtilis | Bacteria | RF00005 | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | Electron microscopy | 3.9 | 2015-04-29 |
| 8 | 7QGU|1|z | Transfer RNA | P-site tRNA | Bacillus subtilis | Bacteria | RF00005 | Structure of the B. subtilis disome - stalled 70S ribosome | Electron microscopy | 4.75 | 2022-03-16 |
| 9 | 7QV3|1|H | Transfer RNA | mRNA, P-site tRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S) | Electron microscopy | 5.14 | 2022-03-09 |
| 10 | 7QH4|1|1 | Transfer RNA | tRNA | Bacillus subtilis | Bacteria | RF00005 | Structure of the B. subtilis disome - collided 70S ribosome | Electron microscopy | 5.45 | 2022-03-16 |
| 11 | 7QH4|1|y | Transfer RNA | tRNA | Bacillus subtilis | Bacteria | RF00005 | Structure of the B. subtilis disome - collided 70S ribosome | Electron microscopy | 5.45 | 2022-03-16 |
Release history
| Release | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7QH4|1|y | Structure of the B. subtilis disome - collided 70S ribosome | ELECTRON MICROSCOPY | 5.45 | 77 | |
| 2 | 7QH4|1|1 | Structure of the B. subtilis disome - collided 70S ribosome | ELECTRON MICROSCOPY | 5.45 | 77 | |
| 3 | 3J9W|1|AX | Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | ELECTRON MICROSCOPY | 3.9 | 77 | |
| 4 | 7QGU|1|z | Structure of the B. subtilis disome - stalled 70S ribosome | ELECTRON MICROSCOPY | 4.75 | 77 | |
| 5 | 7QV1|1|H | Bacillus subtilis collided disome (Leading 70S) | ELECTRON MICROSCOPY | 3.5 | 77 | |
| 6 | 7QV3|1|H | Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S) | ELECTRON MICROSCOPY | 5.14 | 77 | |
| 7 | 8QPP|1|U | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | ELECTRON MICROSCOPY | 3.4 | 77 | |
| 8 | 8R55|1|U | Bacillus subtilis MutS2-collided disome complex (stalled 70S) | ELECTRON MICROSCOPY | 3.57 | 77 | |
| 9 | 7O5B|1|U | Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound | ELECTRON MICROSCOPY | 3.33 | 77 | |
| 10 | 7QV2|1|H | Bacillus subtilis collided disome (Collided 70S) | ELECTRON MICROSCOPY | 3.5 | 77 | |
| 11 | 7QV2|1|x | Bacillus subtilis collided disome (Collided 70S) | ELECTRON MICROSCOPY | 3.5 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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