#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13UCZ|1|R (rep)RNA (5'-R(*GP*G)-3'), RNA (92-MER)The c-di-GMP-I riboswitch bound to GpGX-ray diffraction2.82012-01-04
23UD3|1|RRNA (5'-R(P*GP*A)-3'), RNA (92-MER)The C92U mutant c-di-GMP-I riboswitch bound to pGpAX-ray diffraction3.12012-01-04
33UCU|1|Rdiguanosine monophosphate, RNA (92-MER)The c-di-GMP-I riboswitch bound to pGpGX-ray diffraction2.82012-01-04
43MXH|1|Rc-di-GMP riboswitchNative structure of a c-di-GMP riboswitch from V. choleraeX-ray diffraction2.32010-08-25
53MUR|1|RC92U mutant c-di-GMP riboswitchCrystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction32010-08-25
63MUV|1|RG20A/C92U mutant c-di-GMP riboswitchCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMPX-ray diffraction3.22010-08-25
73UD4|1|RRNA (5'-R(*GP*A)-3'), RNA (92-MER)The C92U mutant c-di-GMP-I riboswitch bound to GpAX-ray diffraction2.72012-01-04
83MUM|1|RG20A mutant c-di-GMP RiboswitchCrystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction2.92010-08-25
93IRW|1|RCyclic di-GMP-I riboswitchc-di-GMP RiboswitchVibrio choleraeBacteriaRF01051Structure of a c-di-GMP riboswitch from V. choleraeX-ray diffraction2.72009-11-10
103IWN|1|AC-di-GMP riboswitchCo-crystal structure of a bacterial c-di-GMP riboswitchX-ray diffraction3.22009-11-10
113MUT|1|RG20A/C92U mutant c-di-GMP riboswitchCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction32010-08-25
123IWN|1|BC-di-GMP riboswitchCo-crystal structure of a bacterial c-di-GMP riboswitchX-ray diffraction3.22009-11-10

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.18
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-10

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13MUV|1|RCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMPX-RAY DIFFRACTION3.290
23IRW|1|RStructure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.790
33UD4|1|RThe C92U mutant c-di-GMP-I riboswitch bound to GpAX-RAY DIFFRACTION2.791
43UCU|1|RThe c-di-GMP-I riboswitch bound to pGpGX-RAY DIFFRACTION2.891
53UD3|1|RThe C92U mutant c-di-GMP-I riboswitch bound to pGpAX-RAY DIFFRACTION3.191
63UCZ|1|RThe c-di-GMP-I riboswitch bound to GpGX-RAY DIFFRACTION2.891
73MUR|1|RCrystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION391
83MUT|1|RCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION391
93MUM|1|RCrystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION2.991
103MXH|1|RNative structure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.391
113IWN|1|BCo-crystal structure of a bacterial c-di-GMP riboswitchX-RAY DIFFRACTION3.293
123IWN|1|ACo-crystal structure of a bacterial c-di-GMP riboswitchX-RAY DIFFRACTION3.293

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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