#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15DM6|1|Y (rep)5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction2.92015-11-11
24IOA|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
34IO9|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
42ZJR|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction2.912008-06-17
52ZJP|1|Z5S ribosomal RNARIBOSOMAL 5S RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.72008-06-17
62ZJQ|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-ray diffraction3.32008-06-17
73CF5|1|Z5S ribosomal RNARRNA-5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.32008-06-17
83DLL|1|Z5S ribosomal RNArRNA-5S ribosomal RNADeinococcus radioduransBacteriaRF00001The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-ray diffraction3.52008-09-16
94IOC|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.62013-03-06
105DM7|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-ray diffraction32015-11-11
113FWO|1|B5S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001The large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-ray diffraction3.712010-01-19
121Y69|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction3.332005-03-01
133JQ4|1|B5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-ray diffraction3.522010-09-08
145JVG|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycinX-ray diffraction3.432016-11-09
155JVH|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicinX-ray diffraction3.582016-11-09
161XBP|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-ray diffraction3.52005-03-01
174U67|1|Y5S ribosomal RNA5s RNADeinococcus radioduransBacteriaRF00001Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-ray diffraction3.652015-08-05
183PIP|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.452011-02-23
191SM1|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-ray diffraction3.422004-08-03
201NWX|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-ray diffraction3.52003-03-18
211NKW|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-ray diffraction3.12003-02-11
221NWY|1|95S ribosomal RNA5S RIBOSOMAL RRNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-ray diffraction3.32003-03-18
233PIO|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.252011-02-23
244WFN|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycinX-ray diffraction3.542015-12-23

Release history

Release2.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.158
Date2016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-08

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13DLL|1|ZThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.5122
24IOA|1|YCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
34IOC|1|YCrystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.6122
44IO9|1|YCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
52ZJQ|1|YInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.3122
63CF5|1|ZThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.3122
72ZJR|1|YRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.91122
82ZJP|1|ZThiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.7122
93PIP|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.45120
103PIO|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.25120
114WFN|1|YCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycinX-RAY DIFFRACTION3.54122
124U67|1|YCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-RAY DIFFRACTION3.65122
135JVH|1|YThe crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicinX-RAY DIFFRACTION3.58120
145JVG|1|YThe large ribosomal subunit from Deinococcus radiodurans in complex with avilamycinX-RAY DIFFRACTION3.43120
155DM6|1|YCrystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION2.9122
165DM7|1|YCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-RAY DIFFRACTION3122
173FWO|1|BThe large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-RAY DIFFRACTION3.71118
183JQ4|1|BThe structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-RAY DIFFRACTION3.52118
191Y69|1|9RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.33118
201XBP|1|9Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.5118
211NWX|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.5118
221NKW|1|9Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.1118
231NWY|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.3118
241SM1|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.42118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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