#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17A0S|1|Y (rep)5S ribosomal RNARNA (122-MER)Deinococcus radiodurans R1BacteriaRF0000150S Deinococcus radiodurans ribosome bounded with mycinamicin IX-ray diffraction3.222021-08-18
24IOA|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
34IO9|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.22013-03-06
45JVG|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The large ribosomal subunit from Deinococcus radiodurans in complex with avilamycinX-ray diffraction3.432016-11-09
55DM6|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction2.92015-11-11
67A0R|1|Y5S ribosomal RNARNA (120-MER)Deinococcus radiodurans R1BacteriaRF0000150S Deinococcus radiodurans ribosome bounded with mycinamicin IX-ray diffraction3.32021-08-18
74IOC|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction3.62013-03-06
85JVH|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicinX-ray diffraction3.582016-11-09
94U67|1|Y5S ribosomal RNA5s RNADeinococcus radioduransBacteriaRF00001Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-ray diffraction3.652015-08-05
103PIO|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.252011-02-23
114WFN|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycinX-ray diffraction3.542015-12-23
123PIP|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-ray diffraction3.452011-02-23
135DM7|1|Y5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-ray diffraction32015-11-11
143DLL|1|Z5S ribosomal RNArRNA-5S ribosomal RNADeinococcus radioduransBacteriaRF00001The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-ray diffraction3.52008-09-16
153JQ4|1|B5S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-ray diffraction3.522010-09-08
161Y69|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-ray diffraction3.332005-03-01
173FWO|1|B5S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001The large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-ray diffraction3.712010-01-19
182ZJR|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Refined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-ray diffraction2.912008-06-17
193CF5|1|Z5S ribosomal RNARRNA-5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.32008-06-17
202ZJQ|1|Y5S ribosomal RNAribosomal 5S RNADeinococcus radioduransBacteriaRF00001Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-ray diffraction3.32008-06-17
212ZJP|1|Z5S ribosomal RNARIBOSOMAL 5S RNADeinococcus radioduransBacteriaRF00001Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-ray diffraction3.72008-06-17
221SM1|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-ray diffraction3.422004-08-03
231NKW|1|95S ribosomal RNA5S ribosomal RNADeinococcus radioduransBacteriaRF00001Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-ray diffraction3.12003-02-11
241NWY|1|95S ribosomal RNA5S RIBOSOMAL RRNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-ray diffraction3.32003-03-18
251XBP|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-ray diffraction3.52005-03-01
261NWX|1|95S ribosomal RNA5S RIBOSOMAL RNADeinococcus radioduransBacteriaRF00001COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-ray diffraction3.52003-03-18

Release history

Release3.1923.1933.1943.1953.1963.1973.198
Date2021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-29

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17A0S|1|Y50S Deinococcus radiodurans ribosome bounded with mycinamicin IX-RAY DIFFRACTION3.22122
25JVG|1|YThe large ribosomal subunit from Deinococcus radiodurans in complex with avilamycinX-RAY DIFFRACTION3.43120
34U67|1|YCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22X-RAY DIFFRACTION3.65122
44WFN|1|YCrystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycinX-RAY DIFFRACTION3.54122
55JVH|1|YThe crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicinX-RAY DIFFRACTION3.58120
63DLL|1|ZThe oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioningX-RAY DIFFRACTION3.5122
74IOC|1|YCrystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.6122
84IO9|1|YCrystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
94IOA|1|YCrystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION3.2122
107A0R|1|Y50S Deinococcus radiodurans ribosome bounded with mycinamicin IX-RAY DIFFRACTION3.3120
112ZJQ|1|YInteraction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunitX-RAY DIFFRACTION3.3122
123CF5|1|ZThiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.3122
132ZJR|1|YRefined native structure of the large ribosomal subunit (50S) from Deinococcus radioduransX-RAY DIFFRACTION2.91122
142ZJP|1|ZThiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radioduransX-RAY DIFFRACTION3.7122
153PIP|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.45120
163PIO|1|YCrystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunitX-RAY DIFFRACTION3.25120
175DM6|1|YCrystal structure of the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION2.9122
185DM7|1|YCrystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin AX-RAY DIFFRACTION3122
193FWO|1|BThe large ribosomal subunit from Deinococcus radiodurans complexed with MethymycinX-RAY DIFFRACTION3.71118
203JQ4|1|BThe structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidinX-RAY DIFFRACTION3.52118
211Y69|1|9RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radioduransX-RAY DIFFRACTION3.33118
221XBP|1|9Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with TiamulinX-RAY DIFFRACTION3.5118
231NWX|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773X-RAY DIFFRACTION3.5118
241NKW|1|9Crystal Structure Of The Large Ribosomal Subunit From Deinococcus RadioduransX-RAY DIFFRACTION3.1118
251NWY|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCINX-RAY DIFFRACTION3.3118
261SM1|1|9COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTINX-RAY DIFFRACTION3.42118

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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