#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15TBW|1|AS (rep)5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
25TBW|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
34V88|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
44V88|1|A75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
55I4L|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
66HHQ|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.12019-02-20
75MEI|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.52017-06-28
85MEI|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.52017-06-28
95OBM|1|75S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.42017-12-13
106HHQ|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.12019-02-20
115LYB|1|75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
125ON6|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.12018-02-28
135I4L|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
145ON6|1|AS5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.12018-02-28
155LYB|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
165OBM|1|35S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.42017-12-13
175NDW|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
185NDW|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
195NDV|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.32017-12-13
205NDV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.32017-12-13
215NDG|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
225NDG|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
235TGM|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.52017-01-18
245TGM|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.52017-01-18
254V7R|1|B25S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome.X-ray diffraction42014-07-09
264V7R|1|D25S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome.X-ray diffraction42014-07-09
275DAT|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
285DGV|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.12016-12-14
295DGF|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.32016-12-14
305DAT|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
315DGE|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.452017-01-25
325DGV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.12016-12-14
335TGA|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
345DC3|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
355DGE|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.452017-01-25
365DC3|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
375TGA|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
385DGF|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.32016-12-14
396T4Q|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.62019-12-25
406TB3|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.82020-04-22
416SNT|1|45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.82020-03-04
424U4R|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
434U3U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
446WOO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.92020-09-23
454U4R|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
464U3U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
474U4Q|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
484U4Q|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
494U3M|1|75S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
504U52|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
514U3M|1|35S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
526QIK|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.12019-06-26
534U4U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
547BT6|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)Electron microscopy3.122020-10-28
556Q8Y|1|BR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.12019-03-13
566YLG|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)Electron microscopy32020-07-29
574U6F|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
585T62|1|B5S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexElectron microscopy3.12017-02-08
594U52|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
604U4U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
616T7T|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.12019-12-25
626XIR|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressElectron microscopy3.22020-08-26
636RZZ|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.22019-06-26
646M62|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.Electron microscopy3.22020-08-26
657BTB|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)Electron microscopy3.222020-10-28
666YLH|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Rix1-Rea1 pre-60S particle - full composite structureElectron microscopy3.12020-07-29
674U4N|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
684U6F|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
696TNU|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.12020-04-22
703JCT|1|35S ribosomal RNARDN5-2 rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-em structure of eukaryotic pre-60S ribosomal subunitsElectron microscopy3.082016-06-01
714U3N|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
724U4Z|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
734U4N|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
746T7I|1|C45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.22019-12-25
756RI5|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.32019-06-26
766S47|1|AB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.282019-07-24
774U4Z|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
784U55|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
794U50|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
805M1J|1|345S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.32017-01-18
814U50|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
824U3N|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
834U4Y|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
844U4Y|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
854U51|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
866Z6K|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesElectron microscopy3.42020-07-29
876Z6J|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionElectron microscopy3.42020-07-29
886QT0|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.42019-06-26
894U55|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
905H4P|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1Electron microscopy3.072017-01-25
916SV4|1|YR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
926SV4|1|ZR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
934U53|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
945APO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1Electron microscopy3.412015-12-16
956QTZ|1|x5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.52019-06-26
966R86|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1-60S ribosomal subunit complex (post-state)Electron microscopy3.42019-07-31
976N8M|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitElectron microscopy3.52019-03-13
984U51|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
994U53|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
1006SV4|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
1016N8O|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitElectron microscopy3.52019-03-13
1026N8J|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitElectron microscopy3.52019-03-13
1036R87|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)Electron microscopy3.42019-06-26
1046HD7|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of the ribosome-NatA complexElectron microscopy3.42018-12-19
1055JUP|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.52016-10-05
1066N8K|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitElectron microscopy3.62019-03-13
1076N8L|1|25S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitElectron microscopy3.62019-03-13
1084U56|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
1096R84|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)Electron microscopy3.62019-06-26
1104U56|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
1116OIG|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Subunit joining exposes nascent pre-40S rRNA for processing and quality controlElectron microscopy3.82020-09-30
1126N8N|1|B5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitElectron microscopy3.82019-03-13
1136S05|1|x5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesElectron microscopy3.92019-06-26
1146GQB|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)Electron microscopy3.92018-07-11
1155MC6|1|BR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeElectron microscopy3.82017-01-18
1166T83|1|Bb5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy42019-12-25
1176T83|1|4b5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy42019-12-25
1185JUT|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy42016-10-05
1196FT6|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsElectron microscopy3.92018-03-28
1205JUO|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy42016-10-05
1215JUU|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy42016-10-05
1226GQV|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)Electron microscopy42018-07-11
1235APN|1|75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1Electron microscopy3.912015-12-16
1244U4O|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
1255JUS|1|D5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)Electron microscopy4.22016-10-05
1266XIQ|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressElectron microscopy4.22020-08-26
1275T6R|1|B5S ribosomal RNA5S Ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexElectron microscopy4.22017-02-08
1284U4O|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
1294V8Y|1|B75S ribosomal RNA5S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy4.32014-07-09
1305GAK|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AElectron microscopy3.882016-02-24
1316GQ1|1|35S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)Electron microscopy4.42018-07-11
1326I7O|1|YR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.32019-01-16
1336I7O|1|BR5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.32019-01-16
1343J6Y|1|5S5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)Electron microscopy6.12014-06-11
1353J6X|1|5S5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)Electron microscopy6.12014-06-11
1363J77|1|5S5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)Electron microscopy6.22014-08-06
1373J78|1|5S5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)Electron microscopy6.32014-08-06
1384V8Z|1|B75S ribosomal RNA5S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexElectron microscopy6.62014-07-09
1394V8T|1|75S ribosomal RNA5S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF00001Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1Electron microscopy8.12014-07-09
1404V7F|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Arx1 pre-60S particle.Electron microscopy8.72014-07-09
1415FL8|1|z5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52015-12-02
1425JCS|1|z5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52016-11-16
1434V6I|1|DC5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeElectron microscopy8.82014-07-09

Release history

Release3.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.168
Date2020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_18586.37NR_all_18586.363.150(141) 3J6X|1|5S, 3J6Y|1|5S, 3J77|1|5S, 3J78|1|5S, 3JCT|1|3, 4U3M|1|3, 4U3M|1|7, 4U3N|1|3, 4U3N|1|7, 4U3U|1|3, 4U3U|1|7, 4U4N|1|3, 4U4N|1|7, 4U4O|1|3, 4U4O|1|7, 4U4Q|1|3, 4U4Q|1|7, 4U4R|1|3, 4U4R|1|7, 4U4U|1|3, 4U4U|1|7, 4U4Y|1|3, 4U4Y|1|7, 4U4Z|1|3, 4U4Z|1|7, 4U50|1|3, 4U50|1|7, 4U51|1|3, 4U51|1|7, 4U52|1|3, 4U52|1|7, 4U53|1|3, 4U53|1|7, 4U55|1|3, 4U55|1|7, 4U56|1|3, 4U56|1|7, 4U6F|1|3, 4U6F|1|7, 4V6I|1|DC, 4V7F|1|3, 4V7R|1|B2, 4V7R|1|D2, 4V88|1|A3, 4V88|1|A7, 4V8T|1|7, 4V8Y|1|B7, 4V8Z|1|B7, 5APN|1|7, 5APO|1|7, 5DAT|1|3, 5DAT|1|7, 5DC3|1|3, 5DC3|1|7, 5DGE|1|3, 5DGE|1|7, 5DGF|1|3, 5DGF|1|7, 5DGV|1|3, 5DGV|1|7, 5FL8|1|z, 5GAK|1|3, 5H4P|1|3, 5I4L|1|3, 5I4L|1|7, 5JCS|1|z, 5JUO|1|D, 5JUP|1|D, 5JUS|1|D, 5JUT|1|D, 5JUU|1|D, 5LYB|1|3, 5LYB|1|7, 5M1J|1|34, 5MC6|1|BR, 5MEI|1|3, 5MEI|1|AS, 5NDG|1|3, 5NDG|1|7, 5NDV|1|3, 5NDV|1|7, 5NDW|1|3, 5NDW|1|7, 5OBM|1|3, 5OBM|1|7, 5ON6|1|3, 5ON6|1|AS, 5T62|1|B, 5T6R|1|B, 5TBW|1|3, 5TBW|1|AS, 5TGA|1|3, 5TGA|1|7, 5TGM|1|3, 5TGM|1|7, 6FT6|1|3, 6GQ1|1|3, 6GQB|1|3, 6GQV|1|3, 6HD7|1|3, 6HHQ|1|3, 6HHQ|1|AS, 6I7O|1|BR, 6I7O|1|YR, 6M62|1|3, 6N8J|1|2, 6N8K|1|2, 6N8L|1|2, 6N8M|1|B, 6N8N|1|B, 6N8O|1|B, 6OIG|1|7, 6Q8Y|1|BR, 6QIK|1|x, 6QT0|1|x, 6QTZ|1|x, 6R84|1|3, 6R86|1|3, 6R87|1|3, 6RI5|1|x, 6RZZ|1|x, 6S05|1|x, 6S47|1|AB, 6SNT|1|4, 6SV4|1|BR, 6SV4|1|YR, 6SV4|1|ZR, 6T4Q|1|C4, 6T7I|1|C4, 6T7T|1|C4, 6T83|1|4b, 6T83|1|Bb, 6TB3|1|BR, 6TNU|1|BR, 6WOO|1|7, 6XIQ|1|3, 6XIR|1|3, 6YLG|1|3, 6YLH|1|3, 6Z6J|1|C4, 6Z6K|1|C4(2) 7BT6|1|3, 7BTB|1|3(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_18586.37NR_all_18586.383.169(143) 3J6X|1|5S, 3J6Y|1|5S, 3J77|1|5S, 3J78|1|5S, 3JCT|1|3, 4U3M|1|3, 4U3M|1|7, 4U3N|1|3, 4U3N|1|7, 4U3U|1|3, 4U3U|1|7, 4U4N|1|3, 4U4N|1|7, 4U4O|1|3, 4U4O|1|7, 4U4Q|1|3, 4U4Q|1|7, 4U4R|1|3, 4U4R|1|7, 4U4U|1|3, 4U4U|1|7, 4U4Y|1|3, 4U4Y|1|7, 4U4Z|1|3, 4U4Z|1|7, 4U50|1|3, 4U50|1|7, 4U51|1|3, 4U51|1|7, 4U52|1|3, 4U52|1|7, 4U53|1|3, 4U53|1|7, 4U55|1|3, 4U55|1|7, 4U56|1|3, 4U56|1|7, 4U6F|1|3, 4U6F|1|7, 4V6I|1|DC, 4V7F|1|3, 4V7R|1|B2, 4V7R|1|D2, 4V88|1|A3, 4V88|1|A7, 4V8T|1|7, 4V8Y|1|B7, 4V8Z|1|B7, 5APN|1|7, 5APO|1|7, 5DAT|1|3, 5DAT|1|7, 5DC3|1|3, 5DC3|1|7, 5DGE|1|3, 5DGE|1|7, 5DGF|1|3, 5DGF|1|7, 5DGV|1|3, 5DGV|1|7, 5FL8|1|z, 5GAK|1|3, 5H4P|1|3, 5I4L|1|3, 5I4L|1|7, 5JCS|1|z, 5JUO|1|D, 5JUP|1|D, 5JUS|1|D, 5JUT|1|D, 5JUU|1|D, 5LYB|1|3, 5LYB|1|7, 5M1J|1|34, 5MC6|1|BR, 5MEI|1|3, 5MEI|1|AS, 5NDG|1|3, 5NDG|1|7, 5NDV|1|3, 5NDV|1|7, 5NDW|1|3, 5NDW|1|7, 5OBM|1|3, 5OBM|1|7, 5ON6|1|3, 5ON6|1|AS, 5T62|1|B, 5T6R|1|B, 5TBW|1|3, 5TBW|1|AS, 5TGA|1|3, 5TGA|1|7, 5TGM|1|3, 5TGM|1|7, 6FT6|1|3, 6GQ1|1|3, 6GQB|1|3, 6GQV|1|3, 6HD7|1|3, 6HHQ|1|3, 6HHQ|1|AS, 6I7O|1|BR, 6I7O|1|YR, 6M62|1|3, 6N8J|1|2, 6N8K|1|2, 6N8L|1|2, 6N8M|1|B, 6N8N|1|B, 6N8O|1|B, 6OIG|1|7, 6Q8Y|1|BR, 6QIK|1|x, 6QT0|1|x, 6QTZ|1|x, 6R84|1|3, 6R86|1|3, 6R87|1|3, 6RI5|1|x, 6RZZ|1|x, 6S05|1|x, 6S47|1|AB, 6SNT|1|4, 6SV4|1|BR, 6SV4|1|YR, 6SV4|1|ZR, 6T4Q|1|C4, 6T7I|1|C4, 6T7T|1|C4, 6T83|1|4b, 6T83|1|Bb, 6TB3|1|BR, 6TNU|1|BR, 6WOO|1|7, 6XIQ|1|3, 6XIR|1|3, 6YLG|1|3, 6YLH|1|3, 6Z6J|1|C4, 6Z6K|1|C4, 7BT6|1|3, 7BTB|1|3(0) (1) 7B7D|1|LB

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16XIQ|1|3Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.2121
26M62|1|3Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.2121
37BT6|1|3Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.12121
46YLH|1|3Rix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.1117
56YLG|1|3Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY3117
66OIG|1|7Subunit joining exposes nascent pre-40S rRNA for processing and quality controlELECTRON MICROSCOPY3.8121
77BTB|1|3Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.22121
86FT6|1|3Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactorsELECTRON MICROSCOPY3.9121
95JUO|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY4121
105JUS|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.2121
115JUT|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY4121
125JUU|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY4121
135JUP|1|DSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.5121
145OBM|1|7Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.4121
155OBM|1|3Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.4121
166RZZ|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.2121
176QIK|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.1121
186S05|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.9121
195H4P|1|3Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.07121
206N8J|1|2Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
216N8L|1|2Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.6121
226N8K|1|2Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.6121
236N8N|1|BCryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunitELECTRON MICROSCOPY3.8121
246N8M|1|BCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
255T62|1|BNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.1121
265T6R|1|BNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexELECTRON MICROSCOPY4.2121
276N8O|1|BCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.5121
286QT0|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.4121
296QTZ|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.5121
306RI5|1|xCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.3121
314U4O|1|3Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
325TGM|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.5121
335DGF|1|3Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.3121
345DGE|1|3Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.45121
355DC3|1|3Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
365DGV|1|3Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.1121
375LYB|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.25121
385TGA|1|3Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.3121
395I4L|1|3Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
404U4Y|1|3Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
416HHQ|1|3Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
425TBW|1|3Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
434V88|1|A3The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
444U3U|1|3Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
454U4R|1|3Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
464U3M|1|3Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
474U4U|1|3Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
484U4Q|1|3Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
494U4N|1|3Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
504U4Z|1|3Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
514U3N|1|3Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
524U55|1|3Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
534U51|1|3Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
545ON6|1|3Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.1121
554U52|1|3Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
564U6F|1|3Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
574U53|1|3Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
584U50|1|3Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
595MEI|1|3Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.5121
605DAT|1|3Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.15121
614U56|1|3Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
625NDW|1|3Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
635NDG|1|3Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
645NDV|1|3Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
656WOO|1|7CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.9121
666S47|1|ABSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.28121
676TB3|1|BRyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.8121
686T4Q|1|C4Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.6121
696SNT|1|4Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.8121
706T7T|1|C4Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.1121
716T7I|1|C4Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.2121
726Q8Y|1|BRCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.1121
736Z6K|1|C4Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.4121
746Z6J|1|C4Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.4121
755APO|1|7Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.41121
765APN|1|7Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.91121
775NDW|1|7Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
785NDG|1|7Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.7121
795TGA|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.3121
805LYB|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.25121
815I4L|1|7Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
824V8T|1|7Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.1121
834V8Y|1|B7Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.3121
844V8Z|1|B7Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.6121
854V88|1|A7The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
864U4Y|1|7Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
874U3U|1|7Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
884U4R|1|7Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
894U3M|1|7Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
904U55|1|7Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
914U3N|1|7Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
924U4Z|1|7Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
934U4N|1|7Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
944U4Q|1|7Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
954U4U|1|7Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
964U53|1|7Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
974U51|1|7Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
984U50|1|7Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.2121
994U56|1|7Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.45121
1005DC3|1|7Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.25121
1015DGE|1|7Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.45121
1025DGF|1|7Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.3121
1035DGV|1|7Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.1121
1044U6F|1|7Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
1054U52|1|7Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
1065DAT|1|7Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.15121
1075TGM|1|7Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.5121
1084U4O|1|7Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.6121
1095MEI|1|ASCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.5121
1105ON6|1|ASCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.1121
1116HHQ|1|ASCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.1121
1125TBW|1|ASCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
1135NDV|1|7Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.3121
1145MC6|1|BRCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.8121
1156TNU|1|BRYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.1121
1166T83|1|4bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY4121
1176SV4|1|BRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
1186I7O|1|BRThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.3121
1196T83|1|BbStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY4121
1206I7O|1|YRThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.3121
1216SV4|1|ZRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
1226SV4|1|YRThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.3121
1236R87|1|3Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.4121
1246R84|1|3Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)ELECTRON MICROSCOPY3.6121
1256R86|1|3Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.4121
1263JCT|1|3Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.08121
1275M1J|1|34Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.3121
1286XIR|1|3Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.2121
1296GQ1|1|3Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.4121
1306GQB|1|3Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.9121
1316GQV|1|3Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY4121
1323J6X|1|5SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.1121
1333J6Y|1|5SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.1121
1343J77|1|5SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.2121
1353J78|1|5SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.3121
1365GAK|1|3Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.88121
1376HD7|1|3Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.4121
1385FL8|1|zCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.5121
1395JCS|1|zCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.5121
1404V7R|1|D2Yeast 80S ribosome.X-RAY DIFFRACTION4121
1414V7R|1|B2Yeast 80S ribosome.X-RAY DIFFRACTION4121
1424V6I|1|DCLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.8118
1434V7F|1|3Arx1 pre-60S particle.ELECTRON MICROSCOPY8.7121

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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