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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5TBW\|1\|AS (rep)	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
2	5TBW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
3	4V88\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
4	4V88\|1\|A7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
5	7OSA\|1\|AB	5S ribosomal RNA	5S	Saccharomyces cerevisiae	Eukarya	RF00001	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	2021-12-08
6	5I4L\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
7	6HHQ\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	2019-02-20
8	5MEI\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
9	5MEI\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
10	5OBM\|1\|7	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
11	6HHQ\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-ray diffraction	3.1	2019-02-20
12	5LYB\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
13	5ON6\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
14	5I4L\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
15	5ON6\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
16	5LYB\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
17	5OBM\|1\|3	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
18	5NDW\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
19	7OSM\|1\|AB	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-ray diffraction	3	2021-12-08
20	5NDW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
21	5NDV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
22	5NDV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
23	5NDG\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
24	5NDG\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
25	5TGM\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
26	5TGM\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
27	4V7R\|1\|B2	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
28	4V7R\|1\|D2	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
29	5DAT\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
30	5DGV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
31	5DGF\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
32	5DAT\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
33	5DGE\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
34	5DGV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
35	5TGA\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
36	5DC3\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
37	5DGE\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
38	5DC3\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
39	5TGA\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
40	5DGF\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
41	7UOO\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	Electron microscopy	2.34	2023-03-15
42	7V08\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain	Electron microscopy	2.36	2023-03-15
43	7ZW0\|1\|LC	5S ribosomal RNA	5S ribosomal RNA (RDN5-1)	Saccharomyces cerevisiae W303	Eukarya	RF00001	FAP-80S Complex - Rotated state	Electron microscopy	2.4	2022-10-05
44	8AGX\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	Electron microscopy	2.4	2023-03-08
45	7TOP\|1\|A5S	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	Electron microscopy	2.4	2022-05-25
46	7UQB\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4	Electron microscopy	2.43	2023-03-15
47	7UQZ\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae BY4741	Eukarya	RF00001	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	Electron microscopy	2.44	2023-03-15
48	7ZUX\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Collided ribosome in a disome unit from S. cerevisiae	Electron microscopy	2.5	2023-02-22
49	8AAF\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state G	Electron microscopy	2.5	2023-03-08
50	6T4Q\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	Electron microscopy	2.6	2019-12-25
51	8AGW\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state D	Electron microscopy	2.6	2023-03-08
52	8AGT\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state F	Electron microscopy	2.6	2023-03-08
53	8AGV\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state H	Electron microscopy	2.6	2023-03-08
54	8AGZ\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	Electron microscopy	2.6	2023-03-08
55	8HFR\|1\|2f	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	NPC-trapped pre-60S particle	Electron microscopy	2.64	2023-04-12
56	8AGU\|1\|h	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast RQC complex in state E	Electron microscopy	2.7	2023-03-08
57	7TOO\|1\|A5S	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	Electron microscopy	2.7	2022-05-25
58	7MPJ\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Stm1 bound vacant 80S structure isolated from nop1-D243A	Electron microscopy	2.7	2022-05-11
59	6TB3\|1\|BR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	Electron microscopy	2.8	2020-04-22
60	6SNT\|1\|4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome stalled on SDD1 mRNA.	Electron microscopy	2.8	2020-03-04
61	7AZY\|1\|F	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Context-specific inhibition of eukaryotic translation by macrolide antibiotics	Electron microscopy	2.877	2021-05-19
62	4U4R\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
63	4U3U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
64	6WOO\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	Electron microscopy	2.9	2020-09-23
65	7UG6\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	Electron microscopy	2.9	2022-12-21
66	4U4R\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
67	4U3U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
68	7N8B\|1\|A3	5S ribosomal RNA	5S	Saccharomyces cerevisiae	Eukarya	RF00001	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A	Electron microscopy	3.05	2022-05-11
69	7MPI\|1\|A3	5S ribosomal RNA	5s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Stm1 bound vacant 80S structure isolated from cbf5-D95A	Electron microscopy	3.05	2022-05-11
70	4U4Q\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
71	4U4Q\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
72	4U3M\|1\|7	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
73	4U52\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
74	4U3M\|1\|3	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
75	8BIP\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	Electron microscopy	3.1	2023-02-08
76	6QIK\|1\|x	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.1	2019-06-26
77	7OHQ\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	Electron microscopy	3.1	2021-11-03
78	4U4U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
79	7BT6\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)	Electron microscopy	3.12	2020-10-28
80	6Q8Y\|1\|BR	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	Electron microscopy	3.1	2019-03-13
81	6YLG\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	Electron microscopy	3	2020-07-29
82	4U6F\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
83	5T62\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	Electron microscopy	3.1	2017-02-08
84	4U52\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
85	4U4U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
86	6T7T\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of yeast 80S ribosome stalled on poly(A) tract.	Electron microscopy	3.1	2019-12-25
87	6XIR\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress	Electron microscopy	3.2	2020-08-26
88	6RZZ\|1\|x	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.2	2019-06-26
89	7ZS5\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA	Electron microscopy	3.2	2023-02-22
90	6M62\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.	Electron microscopy	3.2	2020-08-26
91	7BTB\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)	Electron microscopy	3.22	2020-10-28
92	7RR5\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of ribosomal complex bound with Rbg1/Tma46	Electron microscopy	3.23	2021-11-10
93	6YLH\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Rix1-Rea1 pre-60S particle - full composite structure	Electron microscopy	3.1	2020-07-29
94	4U4N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
95	4U6F\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
96	6TNU\|1\|BR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	Electron microscopy	3.1	2020-04-22
97	3JCT\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	Electron microscopy	3.08	2016-06-01
98	4U3N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
99	4U4Z\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
100	4U4N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
101	6T7I\|1\|C4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	Electron microscopy	3.2	2019-12-25
102	7B7D\|1\|LB	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	Electron microscopy	3.3	2021-03-10
103	6RI5\|1\|x	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.3	2019-06-26
104	6S47\|1\|AB	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	Electron microscopy	3.28	2019-07-24
105	4U4Z\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
106	4U55\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
107	4U50\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
108	5M1J\|1\|34	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	2017-01-18
109	4U50\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
110	4U3N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
111	4U4Y\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
112	4U4Y\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
113	4U51\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
114	6Z6K\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes	Electron microscopy	3.4	2020-07-29
115	6Z6J\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition	Electron microscopy	3.4	2020-07-29
116	6QT0\|1\|x	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.4	2019-06-26
117	7OH3\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae	Electron microscopy	3.4	2021-11-03
118	4U55\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
119	5H4P\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	Electron microscopy	3.07	2017-01-25
120	6SV4\|1\|YR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
121	6SV4\|1\|ZR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
122	4U53\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
123	7ZPQ\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)	Electron microscopy	3.47	2023-02-22
124	5APO\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	Electron microscopy	3.41	2015-12-16
125	6QTZ\|1\|x	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.5	2019-06-26
126	6R86\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast Vms1-60S ribosomal subunit complex (post-state)	Electron microscopy	3.4	2019-07-31
127	6N8M\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	Electron microscopy	3.5	2019-03-13
128	4U51\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
129	4U53\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
130	6SV4\|1\|BR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The cryo-EM structure of SDD1-stalled collided trisome.	Electron microscopy	3.3	2020-03-04
131	6N8O\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	Electron microscopy	3.5	2019-03-13
132	6N8J\|1\|2	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	Electron microscopy	3.5	2019-03-13
133	6R87\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	Electron microscopy	3.4	2019-06-26
134	6HD7\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of the ribosome-NatA complex	Electron microscopy	3.4	2018-12-19
135	5JUP\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	2016-10-05
136	6N8K\|1\|2	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit	Electron microscopy	3.6	2019-03-13
137	6N8L\|1\|2	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit	Electron microscopy	3.6	2019-03-13
138	4U56\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
139	6R84\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)	Electron microscopy	3.6	2019-06-26
140	4U56\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
141	8BQX\|1\|BR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome in complex with Map1 (conformation 2)	Electron microscopy	3.8	2023-03-22
142	8BJQ\|1\|C4	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	Electron microscopy	3.8	2023-02-08
143	6OIG\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Subunit joining exposes nascent pre-40S rRNA for processing and quality control	Electron microscopy	3.8	2020-09-30
144	7Z34\|1\|2	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Structure of pre-60S particle bound to DRG1(AFG2)	Electron microscopy	3.8	2022-09-21
145	6N8N\|1\|B	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit	Electron microscopy	3.8	2019-03-13
146	8BQD\|1\|BR	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome in complex with Map1 (conformation 1)	Electron microscopy	3.9	2023-03-22
147	6S05\|1\|x	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	Electron microscopy	3.9	2019-06-26
148	7NRC\|1\|LB	5S ribosomal RNA	5S rRNA (121-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A	Electron microscopy	3.9	2021-05-05
149	6GQB\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	Electron microscopy	3.9	2018-07-11
150	5MC6\|1\|BR	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	Electron microscopy	3.8	2017-01-18
151	6T83\|1\|Bb	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	Electron microscopy	4	2019-12-25
152	6T83\|1\|4b	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	Electron microscopy	4	2019-12-25
153	5JUT\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	Electron microscopy	4	2016-10-05
154	6FT6\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	Electron microscopy	3.9	2018-03-28
155	5JUO\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	Electron microscopy	4	2016-10-05
156	5JUU\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	Electron microscopy	4	2016-10-05
157	6GQV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	Electron microscopy	4	2018-07-11
158	5APN\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	Electron microscopy	3.91	2015-12-16
159	4U4O\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
160	5JUS\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)	Electron microscopy	4.2	2016-10-05
161	6XIQ\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress	Electron microscopy	4.2	2020-08-26
162	5T6R\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex	Electron microscopy	4.2	2017-02-08
163	4U4O\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
164	7ZUW\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae	Electron microscopy	4.3	2023-02-22
165	7NRD\|1\|LB	5S ribosomal RNA	5S rRNA (121-MER)	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA	Electron microscopy	4.36	2021-04-14
166	4V8Y\|1\|B7	5S ribosomal RNA	5S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	Electron microscopy	4.3	2014-07-09
167	8BGU\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	human MDM2-5S RNP	Electron microscopy	4.1	2023-06-14
168	5GAK\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	Electron microscopy	3.88	2016-02-24
169	6GQ1\|1\|3	5S ribosomal RNA	5.8S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)	Electron microscopy	4.4	2018-07-11
170	7ZRS\|1\|4	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map	Electron microscopy	4.8	2023-02-22
171	7OHT\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A	Electron microscopy	4.7	2021-11-03
172	6I7O\|1\|YR	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.	Electron microscopy	5.3	2019-01-16
173	6I7O\|1\|BR	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.	Electron microscopy	5.3	2019-01-16
174	7OF1\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae S288C	Eukarya	RF00001	Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae	Electron microscopy	3.1	2021-11-03
175	3J6Y\|1\|5S	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)	Electron microscopy	6.1	2014-06-11
176	3J6X\|1\|5S	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)	Electron microscopy	6.1	2014-06-11
177	3J77\|1\|5S	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)	Electron microscopy	6.2	2014-08-06
178	3J78\|1\|5S	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	Electron microscopy	6.3	2014-08-06
179	4V8Z\|1\|B7	5S ribosomal RNA	5S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	Electron microscopy	6.6	2014-07-09
180	4V8T\|1\|7	5S ribosomal RNA	5S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1	Electron microscopy	8.1	2014-07-09
181	4V7F\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Arx1 pre-60S particle.	Electron microscopy	8.7	2014-07-09
182	5JCS\|1\|z	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	Electron microscopy	9.5	2016-11-16
183	4V6I\|1\|DC	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome	Electron microscopy	8.8	2014-07-09

Release history

Release	3.287	3.288	3.289	3.290	3.291	3.292	3.293	3.294	3.295	3.296	3.297	3.298
Date	2023-06-14	2023-06-21	2023-06-28	2023-07-05	2023-07-12	2023-07-19	2023-07-26	2023-08-02	2023-08-09	2023-08-16	2023-08-23	2023-08-30

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_all_18586.57	NR_all_18586.56	3.287	(182) 3J6X\|1\|5S, 3J6Y\|1\|5S, 3J77\|1\|5S, 3J78\|1\|5S, 3JCT\|1\|3, 4U3M\|1\|3, 4U3M\|1\|7, 4U3N\|1\|3, 4U3N\|1\|7, 4U3U\|1\|3, 4U3U\|1\|7, 4U4N\|1\|3, 4U4N\|1\|7, 4U4O\|1\|3, 4U4O\|1\|7, 4U4Q\|1\|3, 4U4Q\|1\|7, 4U4R\|1\|3, 4U4R\|1\|7, 4U4U\|1\|3, 4U4U\|1\|7, 4U4Y\|1\|3, 4U4Y\|1\|7, 4U4Z\|1\|3, 4U4Z\|1\|7, 4U50\|1\|3, 4U50\|1\|7, 4U51\|1\|3, 4U51\|1\|7, 4U52\|1\|3, 4U52\|1\|7, 4U53\|1\|3, 4U53\|1\|7, 4U55\|1\|3, 4U55\|1\|7, 4U56\|1\|3, 4U56\|1\|7, 4U6F\|1\|3, 4U6F\|1\|7, 4V6I\|1\|DC, 4V7F\|1\|3, 4V7R\|1\|B2, 4V7R\|1\|D2, 4V88\|1\|A3, 4V88\|1\|A7, 4V8T\|1\|7, 4V8Y\|1\|B7, 4V8Z\|1\|B7, 5APN\|1\|7, 5APO\|1\|7, 5DAT\|1\|3, 5DAT\|1\|7, 5DC3\|1\|3, 5DC3\|1\|7, 5DGE\|1\|3, 5DGE\|1\|7, 5DGF\|1\|3, 5DGF\|1\|7, 5DGV\|1\|3, 5DGV\|1\|7, 5GAK\|1\|3, 5H4P\|1\|3, 5I4L\|1\|3, 5I4L\|1\|7, 5JCS\|1\|z, 5JUO\|1\|D, 5JUP\|1\|D, 5JUS\|1\|D, 5JUT\|1\|D, 5JUU\|1\|D, 5LYB\|1\|3, 5LYB\|1\|7, 5M1J\|1\|34, 5MC6\|1\|BR, 5MEI\|1\|3, 5MEI\|1\|AS, 5NDG\|1\|3, 5NDG\|1\|7, 5NDV\|1\|3, 5NDV\|1\|7, 5NDW\|1\|3, 5NDW\|1\|7, 5OBM\|1\|3, 5OBM\|1\|7, 5ON6\|1\|3, 5ON6\|1\|AS, 5T62\|1\|B, 5T6R\|1\|B, 5TBW\|1\|3, 5TBW\|1\|AS, 5TGA\|1\|3, 5TGA\|1\|7, 5TGM\|1\|3, 5TGM\|1\|7, 6FT6\|1\|3, 6GQ1\|1\|3, 6GQB\|1\|3, 6GQV\|1\|3, 6HD7\|1\|3, 6HHQ\|1\|3, 6HHQ\|1\|AS, 6I7O\|1\|BR, 6I7O\|1\|YR, 6M62\|1\|3, 6N8J\|1\|2, 6N8K\|1\|2, 6N8L\|1\|2, 6N8M\|1\|B, 6N8N\|1\|B, 6N8O\|1\|B, 6OIG\|1\|7, 6Q8Y\|1\|BR, 6QIK\|1\|x, 6QT0\|1\|x, 6QTZ\|1\|x, 6R84\|1\|3, 6R86\|1\|3, 6R87\|1\|3, 6RI5\|1\|x, 6RZZ\|1\|x, 6S05\|1\|x, 6S47\|1\|AB, 6SNT\|1\|4, 6SV4\|1\|BR, 6SV4\|1\|YR, 6SV4\|1\|ZR, 6T4Q\|1\|C4, 6T7I\|1\|C4, 6T7T\|1\|C4, 6T83\|1\|4b, 6T83\|1\|Bb, 6TB3\|1\|BR, 6TNU\|1\|BR, 6WOO\|1\|7, 6XIQ\|1\|3, 6XIR\|1\|3, 6YLG\|1\|3, 6YLH\|1\|3, 6Z6J\|1\|C4, 6Z6K\|1\|C4, 7AZY\|1\|F, 7B7D\|1\|LB, 7BT6\|1\|3, 7BTB\|1\|3, 7MPI\|1\|A3, 7MPJ\|1\|A3, 7N8B\|1\|A3, 7NRC\|1\|LB, 7NRD\|1\|LB, 7OF1\|1\|3, 7OH3\|1\|3, 7OHQ\|1\|3, 7OHT\|1\|3, 7OSA\|1\|AB, 7OSM\|1\|AB, 7RR5\|1\|C4, 7TOO\|1\|A5S, 7TOP\|1\|A5S, 7UG6\|1\|3, 7UOO\|1\|3, 7UQB\|1\|3, 7UQZ\|1\|3, 7V08\|1\|3, 7Z34\|1\|2, 7ZPQ\|1\|4, 7ZRS\|1\|4, 7ZS5\|1\|3, 7ZUW\|1\|4, 7ZUX\|1\|4, 7ZW0\|1\|LC, 8AAF\|1\|h, 8AGT\|1\|h, 8AGU\|1\|h, 8AGV\|1\|h, 8AGW\|1\|h, 8AGX\|1\|h, 8AGZ\|1\|h, 8BIP\|1\|C4, 8BJQ\|1\|C4, 8BQD\|1\|BR, 8BQX\|1\|BR, 8HFR\|1\|2f	(1) 8BGU\|1\|3	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_all_18586.57	NR_all_18586.58	3.299	(183) 3J6X\|1\|5S, 3J6Y\|1\|5S, 3J77\|1\|5S, 3J78\|1\|5S, 3JCT\|1\|3, 4U3M\|1\|3, 4U3M\|1\|7, 4U3N\|1\|3, 4U3N\|1\|7, 4U3U\|1\|3, 4U3U\|1\|7, 4U4N\|1\|3, 4U4N\|1\|7, 4U4O\|1\|3, 4U4O\|1\|7, 4U4Q\|1\|3, 4U4Q\|1\|7, 4U4R\|1\|3, 4U4R\|1\|7, 4U4U\|1\|3, 4U4U\|1\|7, 4U4Y\|1\|3, 4U4Y\|1\|7, 4U4Z\|1\|3, 4U4Z\|1\|7, 4U50\|1\|3, 4U50\|1\|7, 4U51\|1\|3, 4U51\|1\|7, 4U52\|1\|3, 4U52\|1\|7, 4U53\|1\|3, 4U53\|1\|7, 4U55\|1\|3, 4U55\|1\|7, 4U56\|1\|3, 4U56\|1\|7, 4U6F\|1\|3, 4U6F\|1\|7, 4V6I\|1\|DC, 4V7F\|1\|3, 4V7R\|1\|B2, 4V7R\|1\|D2, 4V88\|1\|A3, 4V88\|1\|A7, 4V8T\|1\|7, 4V8Y\|1\|B7, 4V8Z\|1\|B7, 5APN\|1\|7, 5APO\|1\|7, 5DAT\|1\|3, 5DAT\|1\|7, 5DC3\|1\|3, 5DC3\|1\|7, 5DGE\|1\|3, 5DGE\|1\|7, 5DGF\|1\|3, 5DGF\|1\|7, 5DGV\|1\|3, 5DGV\|1\|7, 5GAK\|1\|3, 5H4P\|1\|3, 5I4L\|1\|3, 5I4L\|1\|7, 5JCS\|1\|z, 5JUO\|1\|D, 5JUP\|1\|D, 5JUS\|1\|D, 5JUT\|1\|D, 5JUU\|1\|D, 5LYB\|1\|3, 5LYB\|1\|7, 5M1J\|1\|34, 5MC6\|1\|BR, 5MEI\|1\|3, 5MEI\|1\|AS, 5NDG\|1\|3, 5NDG\|1\|7, 5NDV\|1\|3, 5NDV\|1\|7, 5NDW\|1\|3, 5NDW\|1\|7, 5OBM\|1\|3, 5OBM\|1\|7, 5ON6\|1\|3, 5ON6\|1\|AS, 5T62\|1\|B, 5T6R\|1\|B, 5TBW\|1\|3, 5TBW\|1\|AS, 5TGA\|1\|3, 5TGA\|1\|7, 5TGM\|1\|3, 5TGM\|1\|7, 6FT6\|1\|3, 6GQ1\|1\|3, 6GQB\|1\|3, 6GQV\|1\|3, 6HD7\|1\|3, 6HHQ\|1\|3, 6HHQ\|1\|AS, 6I7O\|1\|BR, 6I7O\|1\|YR, 6M62\|1\|3, 6N8J\|1\|2, 6N8K\|1\|2, 6N8L\|1\|2, 6N8M\|1\|B, 6N8N\|1\|B, 6N8O\|1\|B, 6OIG\|1\|7, 6Q8Y\|1\|BR, 6QIK\|1\|x, 6QT0\|1\|x, 6QTZ\|1\|x, 6R84\|1\|3, 6R86\|1\|3, 6R87\|1\|3, 6RI5\|1\|x, 6RZZ\|1\|x, 6S05\|1\|x, 6S47\|1\|AB, 6SNT\|1\|4, 6SV4\|1\|BR, 6SV4\|1\|YR, 6SV4\|1\|ZR, 6T4Q\|1\|C4, 6T7I\|1\|C4, 6T7T\|1\|C4, 6T83\|1\|4b, 6T83\|1\|Bb, 6TB3\|1\|BR, 6TNU\|1\|BR, 6WOO\|1\|7, 6XIQ\|1\|3, 6XIR\|1\|3, 6YLG\|1\|3, 6YLH\|1\|3, 6Z6J\|1\|C4, 6Z6K\|1\|C4, 7AZY\|1\|F, 7B7D\|1\|LB, 7BT6\|1\|3, 7BTB\|1\|3, 7MPI\|1\|A3, 7MPJ\|1\|A3, 7N8B\|1\|A3, 7NRC\|1\|LB, 7NRD\|1\|LB, 7OF1\|1\|3, 7OH3\|1\|3, 7OHQ\|1\|3, 7OHT\|1\|3, 7OSA\|1\|AB, 7OSM\|1\|AB, 7RR5\|1\|C4, 7TOO\|1\|A5S, 7TOP\|1\|A5S, 7UG6\|1\|3, 7UOO\|1\|3, 7UQB\|1\|3, 7UQZ\|1\|3, 7V08\|1\|3, 7Z34\|1\|2, 7ZPQ\|1\|4, 7ZRS\|1\|4, 7ZS5\|1\|3, 7ZUW\|1\|4, 7ZUX\|1\|4, 7ZW0\|1\|LC, 8AAF\|1\|h, 8AGT\|1\|h, 8AGU\|1\|h, 8AGV\|1\|h, 8AGW\|1\|h, 8AGX\|1\|h, 8AGZ\|1\|h, 8BGU\|1\|3, 8BIP\|1\|C4, 8BJQ\|1\|C4, 8BQD\|1\|BR, 8BQX\|1\|BR, 8HFR\|1\|2f	(0)	(8) 8EUB\|1\|A3, 8EVP\|1\|A3, 8EVQ\|1\|A3, 8EVR\|1\|A3, 8EVS\|1\|A3, 8EVT\|1\|A3, 8EWB\|1\|A3, 8EWC\|1\|A3

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	4V6I\|1\|DC	Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome	ELECTRON MICROSCOPY	8.8	118
2	4V7R\|1\|D2	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	121
3	4V7R\|1\|B2	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	121
4	7OF1\|1\|3	Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae	ELECTRON MICROSCOPY	3.1	43
5	7Z34\|1\|2	Structure of pre-60S particle bound to DRG1(AFG2)	ELECTRON MICROSCOPY	3.8	121
6	5JCS\|1\|z	CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE	ELECTRON MICROSCOPY	9.5	121
7	5JUO\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
8	5JUS\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	4.2	121
9	5JUT\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
10	5JUU\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
11	5JUP\|1\|D	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	121
12	5GAK\|1\|3	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	ELECTRON MICROSCOPY	3.88	121
13	6HD7\|1\|3	Cryo-EM structure of the ribosome-NatA complex	ELECTRON MICROSCOPY	3.4	121
14	7ZS5\|1\|3	Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA	ELECTRON MICROSCOPY	3.2	121
15	3J78\|1\|5S	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	ELECTRON MICROSCOPY	6.3	121
16	3J77\|1\|5S	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)	ELECTRON MICROSCOPY	6.2	121
17	3J6Y\|1\|5S	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)	ELECTRON MICROSCOPY	6.1	121
18	3J6X\|1\|5S	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)	ELECTRON MICROSCOPY	6.1	121
19	6GQV\|1\|3	Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	ELECTRON MICROSCOPY	4	121
20	6GQB\|1\|3	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	ELECTRON MICROSCOPY	3.9	121
21	6GQ1\|1\|3	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)	ELECTRON MICROSCOPY	4.4	121
22	6XIR\|1\|3	Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress	ELECTRON MICROSCOPY	3.2	121
23	5M1J\|1\|34	Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	121
24	3JCT\|1\|3	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	ELECTRON MICROSCOPY	3.08	121
25	7OSM\|1\|AB	Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	121
26	7OSA\|1\|AB	Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands	X-RAY DIFFRACTION	3	121
27	5NDV\|1\|7	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
28	5TBW\|1\|AS	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
29	6HHQ\|1\|AS	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
30	5ON6\|1\|AS	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	121
31	5MEI\|1\|AS	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
32	4U4O\|1\|7	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	121
33	4U52\|1\|7	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
34	4U6F\|1\|7	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
35	5DGE\|1\|7	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
36	5DC3\|1\|7	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
37	5DGV\|1\|7	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
38	5DGF\|1\|7	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
39	5DAT\|1\|7	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
40	5TGM\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
41	4U50\|1\|7	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
42	4U56\|1\|7	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
43	4U53\|1\|7	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
44	4U51\|1\|7	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
45	5LYB\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
46	5I4L\|1\|7	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
47	4U4U\|1\|7	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
48	4U4Q\|1\|7	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
49	4U4N\|1\|7	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
50	4U55\|1\|7	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
51	4U4Z\|1\|7	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
52	4U3N\|1\|7	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
53	4U3U\|1\|7	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
54	4U4R\|1\|7	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
55	4U3M\|1\|7	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
56	4U4Y\|1\|7	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
57	4V88\|1\|A7	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
58	4V8Y\|1\|B7	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	ELECTRON MICROSCOPY	4.3	121
59	4V8Z\|1\|B7	Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex	ELECTRON MICROSCOPY	6.6	121
60	4V8T\|1\|7	Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1	ELECTRON MICROSCOPY	8.1	121
61	5TGA\|1\|7	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
62	5NDG\|1\|7	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
63	5NDW\|1\|7	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
64	6Z6J\|1\|C4	Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition	ELECTRON MICROSCOPY	3.4	121
65	6Z6K\|1\|C4	Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes	ELECTRON MICROSCOPY	3.4	121
66	6WOO\|1\|7	CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP	ELECTRON MICROSCOPY	2.9	121
67	6S47\|1\|AB	Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1	ELECTRON MICROSCOPY	3.28	121
68	7MPJ\|1\|A3	Stm1 bound vacant 80S structure isolated from nop1-D243A	ELECTRON MICROSCOPY	2.7	120
69	7N8B\|1\|A3	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A	ELECTRON MICROSCOPY	3.05	121
70	7MPI\|1\|A3	Stm1 bound vacant 80S structure isolated from cbf5-D95A	ELECTRON MICROSCOPY	3.05	121
71	7AZY\|1\|F	Context-specific inhibition of eukaryotic translation by macrolide antibiotics	ELECTRON MICROSCOPY	2.877	121
72	6Q8Y\|1\|BR	Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex	ELECTRON MICROSCOPY	3.1	121
73	5MC6\|1\|BR	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	ELECTRON MICROSCOPY	3.8	121
74	6R86\|1\|3	Yeast Vms1-60S ribosomal subunit complex (post-state)	ELECTRON MICROSCOPY	3.4	121
75	6R84\|1\|3	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)	ELECTRON MICROSCOPY	3.6	121
76	6R87\|1\|3	Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)	ELECTRON MICROSCOPY	3.4	121
77	6SV4\|1\|YR	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	121
78	6SV4\|1\|ZR	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	121
79	6I7O\|1\|YR	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.	ELECTRON MICROSCOPY	5.3	121
80	6T83\|1\|Bb	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	ELECTRON MICROSCOPY	4	121
81	6I7O\|1\|BR	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.	ELECTRON MICROSCOPY	5.3	121
82	6SV4\|1\|BR	The cryo-EM structure of SDD1-stalled collided trisome.	ELECTRON MICROSCOPY	3.3	121
83	6T83\|1\|4b	Structure of yeast disome (di-ribosome) stalled on poly(A) tract.	ELECTRON MICROSCOPY	4	121
84	7NRD\|1\|LB	Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA	ELECTRON MICROSCOPY	4.36	121
85	7NRC\|1\|LB	Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A	ELECTRON MICROSCOPY	3.9	121
86	6TNU\|1\|BR	Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.	ELECTRON MICROSCOPY	3.1	121
87	8BQX\|1\|BR	Yeast 80S ribosome in complex with Map1 (conformation 2)	ELECTRON MICROSCOPY	3.8	121
88	8BQD\|1\|BR	Yeast 80S ribosome in complex with Map1 (conformation 1)	ELECTRON MICROSCOPY	3.9	121
89	7B7D\|1\|LB	Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs	ELECTRON MICROSCOPY	3.3	121
90	6TB3\|1\|BR	yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex	ELECTRON MICROSCOPY	2.8	121
91	6T4Q\|1\|C4	Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.	ELECTRON MICROSCOPY	2.6	121
92	6SNT\|1\|4	Yeast 80S ribosome stalled on SDD1 mRNA.	ELECTRON MICROSCOPY	2.8	121
93	6T7T\|1\|C4	Structure of yeast 80S ribosome stalled on poly(A) tract.	ELECTRON MICROSCOPY	3.1	121
94	6T7I\|1\|C4	Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.	ELECTRON MICROSCOPY	3.2	121
95	8BIP\|1\|C4	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	ELECTRON MICROSCOPY	3.1	121
96	8BJQ\|1\|C4	Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex	ELECTRON MICROSCOPY	3.8	121
97	7ZW0\|1\|LC	FAP-80S Complex - Rotated state	ELECTRON MICROSCOPY	2.4	121
98	8AGW\|1\|h	Yeast RQC complex in state D	ELECTRON MICROSCOPY	2.6	121
99	8AGZ\|1\|h	Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position	ELECTRON MICROSCOPY	2.6	121
100	8AGX\|1\|h	Yeast RQC complex in state with the RING domain of Ltn1 in the IN position	ELECTRON MICROSCOPY	2.4	121
101	8AAF\|1\|h	Yeast RQC complex in state G	ELECTRON MICROSCOPY	2.5	121
102	8AGT\|1\|h	Yeast RQC complex in state F	ELECTRON MICROSCOPY	2.6	121
103	8AGV\|1\|h	Yeast RQC complex in state H	ELECTRON MICROSCOPY	2.6	121
104	8AGU\|1\|h	Yeast RQC complex in state E	ELECTRON MICROSCOPY	2.7	121
105	7ZRS\|1\|4	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map	ELECTRON MICROSCOPY	4.8	121
106	7ZPQ\|1\|4	Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)	ELECTRON MICROSCOPY	3.47	121
107	5NDV\|1\|3	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
108	4U4O\|1\|3	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	121
109	5NDG\|1\|3	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
110	5NDW\|1\|3	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
111	4U56\|1\|3	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
112	5MEI\|1\|3	Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
113	4U53\|1\|3	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
114	4U50\|1\|3	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
115	5DAT\|1\|3	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
116	5TGA\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
117	5LYB\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
118	4U6F\|1\|3	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
119	4U3N\|1\|3	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
120	4U52\|1\|3	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
121	5ON6\|1\|3	Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	121
122	4U51\|1\|3	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
123	4U55\|1\|3	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
124	4U4Z\|1\|3	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
125	4U4N\|1\|3	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
126	4U4Q\|1\|3	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
127	4U4R\|1\|3	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
128	4V88\|1\|A3	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
129	4U3U\|1\|3	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
130	4U4U\|1\|3	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
131	4U3M\|1\|3	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
132	5TBW\|1\|3	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
133	6HHQ\|1\|3	Crystal structure of compound C45 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
134	4U4Y\|1\|3	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
135	5I4L\|1\|3	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
136	5DGV\|1\|3	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
137	5DGF\|1\|3	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
138	5DGE\|1\|3	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
139	5DC3\|1\|3	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
140	5TGM\|1\|3	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
141	5APN\|1\|7	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	ELECTRON MICROSCOPY	3.91	121
142	5APO\|1\|7	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	ELECTRON MICROSCOPY	3.41	121
143	7TOP\|1\|A5S	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20	ELECTRON MICROSCOPY	2.4	121
144	7TOO\|1\|A5S	Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20	ELECTRON MICROSCOPY	2.7	121
145	7ZUX\|1\|4	Collided ribosome in a disome unit from S. cerevisiae	ELECTRON MICROSCOPY	2.5	121
146	7ZUW\|1\|4	Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae	ELECTRON MICROSCOPY	4.3	121
147	7RR5\|1\|C4	Structure of ribosomal complex bound with Rbg1/Tma46	ELECTRON MICROSCOPY	3.23	121
148	6RI5\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.3	121
149	6QTZ\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.5	121
150	6QT0\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.4	121
151	5OBM\|1\|7	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	121
152	5OBM\|1\|3	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	121
153	6RZZ\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.2	121
154	6QIK\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.1	121
155	6S05\|1\|x	Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles	ELECTRON MICROSCOPY	3.9	121
156	5H4P\|1\|3	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	ELECTRON MICROSCOPY	3.07	121
157	6N8J\|1\|2	Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	121
158	6N8O\|1\|B	Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	121
159	5T6R\|1\|B	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex	ELECTRON MICROSCOPY	4.2	121
160	5T62\|1\|B	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	ELECTRON MICROSCOPY	3.1	121
161	6N8M\|1\|B	Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.5	121
162	6N8N\|1\|B	Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.8	121
163	6N8L\|1\|2	Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.6	121
164	6N8K\|1\|2	Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit	ELECTRON MICROSCOPY	3.6	121
165	8HFR\|1\|2f	NPC-trapped pre-60S particle	ELECTRON MICROSCOPY	2.64	121
166	6OIG\|1\|7	Subunit joining exposes nascent pre-40S rRNA for processing and quality control	ELECTRON MICROSCOPY	3.8	121
167	6YLG\|1\|3	Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)	ELECTRON MICROSCOPY	3	117
168	6YLH\|1\|3	Rix1-Rea1 pre-60S particle - full composite structure	ELECTRON MICROSCOPY	3.1	117
169	6FT6\|1\|3	Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	ELECTRON MICROSCOPY	3.9	121
170	7UG6\|1\|3	Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922	ELECTRON MICROSCOPY	2.9	121
171	7BTB\|1\|3	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)	ELECTRON MICROSCOPY	3.22	121
172	7BT6\|1\|3	Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)	ELECTRON MICROSCOPY	3.12	121
173	7UQB\|1\|3	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4	ELECTRON MICROSCOPY	2.43	120
174	7UOO\|1\|3	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	ELECTRON MICROSCOPY	2.34	120
175	7UQZ\|1\|3	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	ELECTRON MICROSCOPY	2.44	120
176	7V08\|1\|3	Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain	ELECTRON MICROSCOPY	2.36	120
177	7OHQ\|1\|3	Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	ELECTRON MICROSCOPY	3.1	121
178	7OH3\|1\|3	Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae	ELECTRON MICROSCOPY	3.4	121
179	7OHT\|1\|3	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A	ELECTRON MICROSCOPY	4.7	114
180	6M62\|1\|3	Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.	ELECTRON MICROSCOPY	3.2	121
181	6XIQ\|1\|3	Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress	ELECTRON MICROSCOPY	4.2	121
182	8BGU\|1\|3	human MDM2-5S RNP	ELECTRON MICROSCOPY	4.1	121
183	4V7F\|1\|3	Arx1 pre-60S particle.	ELECTRON MICROSCOPY	8.7	121

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_all_18586.57 Obsolete

Release history

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