Equivalence class NR_all_21280.28 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4KZY|1|i (rep) | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-ray diffraction | 7.01 | 2013-07-24 |
| 2 | 4KZZ|1|i | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-ray diffraction | 7.03 | 2013-07-24 |
| 3 | 4KZX|1|i | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 40S ribosomal subunit in complex with eIF1. | X-ray diffraction | 7.81 | 2013-07-24 |
| 4 | 7O7Y|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Electron microscopy | 2.2 | 2021-06-02 |
| 5 | 7OYD|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | Electron microscopy | 2.3 | 2022-07-20 |
| 6 | 7O7Z|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Electron microscopy | 2.4 | 2021-06-02 |
| 7 | 7JQB|1|A | Small subunit ribosomal RNA | rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex | Electron microscopy | 2.7 | 2020-12-02 |
| 8 | 7ZJW|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | Electron microscopy | 2.8 | 2022-10-19 |
| 9 | 7UCK|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | Electron microscopy | 2.8 | 2022-06-01 |
| 10 | 6SGC|1|A1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome stalled on a poly(A) tail | Electron microscopy | 2.8 | 2019-12-04 |
| 11 | 7TOR|1|A18S | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.9 | 2022-05-25 |
| 12 | 7O80|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | Electron microscopy | 2.9 | 2021-06-02 |
| 13 | 8P2K|1|A2 | Small subunit ribosomal RNA | 18s rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Ternary complex of translating ribosome, NAC and METAP1 | Electron microscopy | 2.9 | 2023-07-19 |
| 14 | 7NWI|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S | Electron microscopy | 3.13 | 2021-07-07 |
| 15 | 6YAL|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 48S late-stage initiation complex with beta-globin mRNA | Electron microscopy | 3 | 2020-04-08 |
| 16 | 6R5Q|1|K | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | Electron microscopy | 3 | 2019-07-10 |
| 17 | 7TOQ|1|A18S | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR | Electron microscopy | 3.1 | 2022-05-25 |
| 18 | 7ZJX|1|S2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome programmed with SECIS and SBP2 | Electron microscopy | 3.1 | 2022-09-07 |
| 19 | 7O81|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot | Electron microscopy | 3.1 | 2021-06-02 |
| 20 | 6ZVK|1|K3 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF01960 | The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism | Electron microscopy | 3.49 | 2020-12-23 |
| 21 | 6P5I|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) | Electron microscopy | 3.1 | 2019-09-18 |
| 22 | 6P5K|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) | Electron microscopy | 3.1 | 2019-09-18 |
| 23 | 6P5J|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) | Electron microscopy | 3.1 | 2019-09-18 |
| 24 | 7UCJ|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 80S translation initiation complex with mRNA and Harringtonine | Electron microscopy | 3.1 | 2022-06-01 |
| 25 | 6P4G|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1) | Electron microscopy | 3.1 | 2019-09-18 |
| 26 | 7MDZ|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | 80S rabbit ribosome stalled with benzamide-CHX | Electron microscopy | 3.2 | 2021-09-01 |
| 27 | 6R6P|1|K | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of XBP1u-paused ribosome nascent chain complex (rotated state) | Electron microscopy | 3.1 | 2019-07-10 |
| 28 | 6P4H|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2) | Electron microscopy | 3.2 | 2019-09-18 |
| 29 | 6P5N|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 | Electron microscopy | 3.2 | 2019-09-25 |
| 30 | 6D9J|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 31 | 7JQC|1|A | Small subunit ribosomal RNA | rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex | Electron microscopy | 3.3 | 2020-12-02 |
| 32 | 5LZS|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | Electron microscopy | 3.31 | 2016-11-30 |
| 33 | 6W2T|1|a | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2) | Electron microscopy | 3.36 | 2020-04-22 |
| 34 | 7A01|1|K3 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF01960 | The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism | Electron microscopy | 3.6 | 2020-12-30 |
| 35 | 6MTD|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | Electron microscopy | 3.3 | 2018-11-21 |
| 36 | 5LZV|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | Electron microscopy | 3.35 | 2016-11-30 |
| 37 | 6D90|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 38 | 7SYS|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). | Electron microscopy | 3.5 | 2022-07-27 |
| 39 | 8BTK|1|A2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the TRAP complex with the Sec translocon and a translating ribosome | Electron microscopy | 3.5 | 2023-05-24 |
| 40 | 6YAN|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 48S late-stage translation initiation complex with histone 4 mRNA | Electron microscopy | 3.48 | 2020-04-08 |
| 41 | 6MTC|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | Electron microscopy | 3.4 | 2018-11-21 |
| 42 | 6MTE|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | Electron microscopy | 3.4 | 2018-11-21 |
| 43 | 6W2S|1|A | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1) | Electron microscopy | 3.47 | 2020-04-22 |
| 44 | 6GZ5|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | Electron microscopy | 3.5 | 2018-12-05 |
| 45 | 7SYR|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). | Electron microscopy | 3.6 | 2022-07-27 |
| 46 | 5LZZ|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | Electron microscopy | 3.47 | 2016-11-30 |
| 47 | 5LZW|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | Electron microscopy | 3.53 | 2016-11-30 |
| 48 | 5LZX|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | Electron microscopy | 3.67 | 2016-11-30 |
| 49 | 6GZ3|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | Electron microscopy | 3.6 | 2018-12-05 |
| 50 | 7SYX|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | Electron microscopy | 3.7 | 2022-07-13 |
| 51 | 7SYW|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | Electron microscopy | 3.7 | 2022-07-13 |
| 52 | 7NWG|1|A2 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. | Electron microscopy | 3.8 | 2021-07-07 |
| 53 | 6GZ4|1|B1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | Electron microscopy | 3.6 | 2018-12-05 |
| 54 | 5LZT|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | Electron microscopy | 3.65 | 2016-11-30 |
| 55 | 6YAM|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA | Electron microscopy | 3.6 | 2020-04-08 |
| 56 | 6MTB|1|9 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | Electron microscopy | 3.6 | 2018-11-21 |
| 57 | 6HCJ|1|A2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | Electron microscopy | 3.8 | 2018-10-17 |
| 58 | 7SYQ|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt) | Electron microscopy | 3.8 | 2022-07-27 |
| 59 | 6R6G|1|K | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of XBP1u-paused ribosome nascent chain complex with SRP. | Electron microscopy | 3.7 | 2019-07-10 |
| 60 | 5LZU|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | Electron microscopy | 3.75 | 2016-11-30 |
| 61 | 6HCF|1|A1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | Electron microscopy | 3.9 | 2018-10-17 |
| 62 | 7SYV|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) | Electron microscopy | 3.9 | 2022-07-20 |
| 63 | 6R7Q|1|K | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of XBP1u-paused ribosome nascent chain complex with Sec61. | Electron microscopy | 3.9 | 2019-07-10 |
| 64 | 3JAH|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | Electron microscopy | 3.45 | 2015-08-12 |
| 65 | 5LZY|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | Electron microscopy | 3.99 | 2016-11-30 |
| 66 | 7SYN|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) | Electron microscopy | 4 | 2022-07-13 |
| 67 | 7SYP|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt) | Electron microscopy | 4 | 2022-07-27 |
| 68 | 7NWH|1|9 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. | Electron microscopy | 4.1 | 2021-07-07 |
| 69 | 5FLX|1|1 | Small subunit ribosomal RNA | 18S RRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Mammalian 40S HCV-IRES complex | Electron microscopy | 3.9 | 2015-12-23 |
| 70 | 3JAG|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
| 71 | 3JAI|1|9 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | Electron microscopy | 3.65 | 2015-08-12 |
| 72 | 7SYG|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) | Electron microscopy | 4.3 | 2022-07-13 |
| 73 | 7SYK|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) | Electron microscopy | 4.2 | 2022-07-13 |
| 74 | 7SYT|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | Electron microscopy | 4.4 | 2022-07-13 |
| 75 | 7SYI|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) | Electron microscopy | 4.5 | 2022-07-13 |
| 76 | 7SYL|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) | Electron microscopy | 4.5 | 2022-07-13 |
| 77 | 7SYU|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 78 | 7SYH|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) | Electron microscopy | 4.6 | 2022-07-13 |
| 79 | 7SYO|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII) | Electron microscopy | 4.6 | 2022-07-27 |
| 80 | 7SYM|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) | Electron microscopy | 4.8 | 2022-07-13 |
| 81 | 7SYJ|1|2 | Small subunit ribosomal RNA | 18S rRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) | Electron microscopy | 4.8 | 2022-07-13 |
| 82 | 5K0Y|1|A | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | Electron microscopy | 5.8 | 2016-07-13 |
| 83 | 6HCQ|1|A2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the rabbit collided di-ribosome (collided monosome) | Electron microscopy | 6.5 | 2018-10-17 |
| 84 | 6HCM|1|A1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the rabbit collided di-ribosome (stalled monosome) | Electron microscopy | 6.8 | 2018-10-17 |
| 85 | 4UJE|1|B1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
| 86 | 3JAN|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the scanning state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
| 87 | 3JAJ|1|S2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | Structure of the engaged state of the mammalian SRP-ribosome complex | Electron microscopy | 3.75 | 2015-08-05 |
| 88 | 4UJD|1|C1 | Small subunit ribosomal RNA | 18S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
| 89 | 4D61|1|1 | Small subunit ribosomal RNA | 18S RRNA | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-03-04 |
| 90 | 4D5L|1|1 | Small subunit ribosomal RNA | 18S RRNA 2 | Oryctolagus cuniculus | Eukarya | RF01960 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | Electron microscopy | 9 | 2015-02-04 |
| 91 | 4UJC|1|C1 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF01960 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
Release history
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4UJE|1|B1 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 1742 | |
| 2 | 4D5L|1|1 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 | |
| 3 | 4D61|1|1 | Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state | ELECTRON MICROSCOPY | 9 | 1742 | |
| 4 | 4UJC|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 1742 | |
| 5 | 4UJD|1|C1 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 1742 | |
| 6 | 5K0Y|1|A | m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face | ELECTRON MICROSCOPY | 5.8 | 1776 | |
| 7 | 4KZZ|1|i | Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A | X-RAY DIFFRACTION | 7.03 | 1797 | |
| 8 | 4KZY|1|i | Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A. | X-RAY DIFFRACTION | 7.01 | 1840 | |
| 9 | 4KZX|1|i | Rabbit 40S ribosomal subunit in complex with eIF1. | X-RAY DIFFRACTION | 7.81 | 1797 | |
| 10 | 7A01|1|K3 | The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism | ELECTRON MICROSCOPY | 3.6 | 1801 | |
| 11 | 6ZVK|1|K3 | The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism | ELECTRON MICROSCOPY | 3.49 | 1869 | |
| 12 | 3JAN|1|S2 | Structure of the scanning state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 | |
| 13 | 3JAJ|1|S2 | Structure of the engaged state of the mammalian SRP-ribosome complex | ELECTRON MICROSCOPY | 3.75 | 1742 | |
| 14 | 3JAI|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 | |
| 15 | 3JAG|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon | ELECTRON MICROSCOPY | 3.65 | 1719 | |
| 16 | 3JAH|1|9 | Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon | ELECTRON MICROSCOPY | 3.45 | 1719 | |
| 17 | 7NWI|1|9 | Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S | ELECTRON MICROSCOPY | 3.13 | 1719 | |
| 18 | 6YAN|1|2 | Mammalian 48S late-stage translation initiation complex with histone 4 mRNA | ELECTRON MICROSCOPY | 3.48 | 1743 | |
| 19 | 6YAL|1|2 | Mammalian 48S late-stage initiation complex with beta-globin mRNA | ELECTRON MICROSCOPY | 3 | 1743 | |
| 20 | 6YAM|1|2 | Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA | ELECTRON MICROSCOPY | 3.6 | 1742 | |
| 21 | 6GZ5|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3) | ELECTRON MICROSCOPY | 3.5 | 1708 | |
| 22 | 7NWH|1|9 | Mammalian pre-termination 80S ribosome with eRF1 and eRF3 bound by Blasticidin S. | ELECTRON MICROSCOPY | 4.1 | 1698 | |
| 23 | 6HCJ|1|A2 | Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs | ELECTRON MICROSCOPY | 3.8 | 1740 | |
| 24 | 6HCQ|1|A2 | Structure of the rabbit collided di-ribosome (collided monosome) | ELECTRON MICROSCOPY | 6.5 | 1740 | |
| 25 | 7NWG|1|A2 | Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S. | ELECTRON MICROSCOPY | 3.8 | 1740 | |
| 26 | 6HCF|1|A1 | Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon | ELECTRON MICROSCOPY | 3.9 | 1732 | |
| 27 | 6HCM|1|A1 | Structure of the rabbit collided di-ribosome (stalled monosome) | ELECTRON MICROSCOPY | 6.8 | 1732 | |
| 28 | 6D90|1|2 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 1697 | |
| 29 | 7SYU|1|2 | Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII) | ELECTRON MICROSCOPY | 4.6 | 1697 | |
| 30 | 7SYT|1|2 | Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt) | ELECTRON MICROSCOPY | 4.4 | 1697 | |
| 31 | 7SYS|1|2 | Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII). | ELECTRON MICROSCOPY | 3.5 | 1697 | |
| 32 | 7SYR|1|2 | Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt). | ELECTRON MICROSCOPY | 3.6 | 1697 | |
| 33 | 7SYW|1|2 | Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt) | ELECTRON MICROSCOPY | 3.7 | 1697 | |
| 34 | 7SYX|1|2 | Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII) | ELECTRON MICROSCOPY | 3.7 | 1697 | |
| 35 | 6P5N|1|2 | Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 | ELECTRON MICROSCOPY | 3.2 | 1697 | |
| 36 | 7UCJ|1|9 | Mammalian 80S translation initiation complex with mRNA and Harringtonine | ELECTRON MICROSCOPY | 3.1 | 1664 | |
| 37 | 7UCK|1|9 | 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine | ELECTRON MICROSCOPY | 2.8 | 1664 | |
| 38 | 7TOR|1|A18S | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | ELECTRON MICROSCOPY | 2.9 | 1691 | |
| 39 | 6R6G|1|K | Structure of XBP1u-paused ribosome nascent chain complex with SRP. | ELECTRON MICROSCOPY | 3.7 | 1698 | |
| 40 | 6R5Q|1|K | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | ELECTRON MICROSCOPY | 3 | 1698 | |
| 41 | 6R7Q|1|K | Structure of XBP1u-paused ribosome nascent chain complex with Sec61. | ELECTRON MICROSCOPY | 3.9 | 1698 | |
| 42 | 6MTC|1|9 | Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state) | ELECTRON MICROSCOPY | 3.4 | 1664 | |
| 43 | 6MTB|1|9 | Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) | ELECTRON MICROSCOPY | 3.6 | 1664 | |
| 44 | 5LZS|1|9 | Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B | ELECTRON MICROSCOPY | 3.31 | 1697 | |
| 45 | 5LZT|1|9 | Structure of the mammalian ribosomal termination complex with eRF1 and eRF3. | ELECTRON MICROSCOPY | 3.65 | 1698 | |
| 46 | 5LZV|1|9 | Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1. | ELECTRON MICROSCOPY | 3.35 | 1698 | |
| 47 | 5LZU|1|9 | Structure of the mammalian ribosomal termination complex with accommodated eRF1 | ELECTRON MICROSCOPY | 3.75 | 1698 | |
| 48 | 5LZW|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA. | ELECTRON MICROSCOPY | 3.53 | 1698 | |
| 49 | 5LZX|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon. | ELECTRON MICROSCOPY | 3.67 | 1698 | |
| 50 | 5LZZ|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l (combined) | ELECTRON MICROSCOPY | 3.47 | 1698 | |
| 51 | 5LZY|1|9 | Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA. | ELECTRON MICROSCOPY | 3.99 | 1698 | |
| 52 | 6SGC|1|A1 | Rabbit 80S ribosome stalled on a poly(A) tail | ELECTRON MICROSCOPY | 2.8 | 1697 | |
| 53 | 7MDZ|1|9 | 80S rabbit ribosome stalled with benzamide-CHX | ELECTRON MICROSCOPY | 3.2 | 1697 | |
| 54 | 8P2K|1|A2 | Ternary complex of translating ribosome, NAC and METAP1 | ELECTRON MICROSCOPY | 2.9 | 1688 | |
| 55 | 8BTK|1|A2 | Structure of the TRAP complex with the Sec translocon and a translating ribosome | ELECTRON MICROSCOPY | 3.5 | 1688 | |
| 56 | 7O7Y|1|A2 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | ELECTRON MICROSCOPY | 2.2 | 1688 | |
| 57 | 7O7Z|1|A2 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | ELECTRON MICROSCOPY | 2.4 | 1688 | |
| 58 | 7O80|1|A2 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | ELECTRON MICROSCOPY | 2.9 | 1688 | |
| 59 | 7ZJW|1|S2 | Rabbit 80S ribosome as it decodes the Sec-UGA codon | ELECTRON MICROSCOPY | 2.8 | 1689 | |
| 60 | 7O81|1|A2 | Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot | ELECTRON MICROSCOPY | 3.1 | 1688 | |
| 61 | 6R6P|1|K | Structure of XBP1u-paused ribosome nascent chain complex (rotated state) | ELECTRON MICROSCOPY | 3.1 | 1698 | |
| 62 | 7TOQ|1|A18S | Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PR | ELECTRON MICROSCOPY | 3.1 | 1690 | |
| 63 | 7JQB|1|A | SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex | ELECTRON MICROSCOPY | 2.7 | 1697 | |
| 64 | 7JQC|1|A | SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex | ELECTRON MICROSCOPY | 3.3 | 1697 | |
| 65 | 7SYI|1|2 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII) | ELECTRON MICROSCOPY | 4.5 | 1697 | |
| 66 | 7SYK|1|2 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 5(delta dII) | ELECTRON MICROSCOPY | 4.2 | 1697 | |
| 67 | 7SYG|1|2 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII) | ELECTRON MICROSCOPY | 4.3 | 1697 | |
| 68 | 7SYH|1|2 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII) | ELECTRON MICROSCOPY | 4.6 | 1697 | |
| 69 | 7SYJ|1|2 | Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII) | ELECTRON MICROSCOPY | 4.8 | 1697 | |
| 70 | 7SYL|1|2 | Structure of the HCV IRES bound to the 40S ribosomal subunit, closed conformation. Structure 6(delta dII) | ELECTRON MICROSCOPY | 4.5 | 1697 | |
| 71 | 7ZJX|1|S2 | Rabbit 80S ribosome programmed with SECIS and SBP2 | ELECTRON MICROSCOPY | 3.1 | 1689 | |
| 72 | 6P4H|1|2 | Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2) | ELECTRON MICROSCOPY | 3.2 | 1697 | |
| 73 | 6P4G|1|2 | Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1) | ELECTRON MICROSCOPY | 3.1 | 1697 | |
| 74 | 6P5K|1|2 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) | ELECTRON MICROSCOPY | 3.1 | 1697 | |
| 75 | 6P5I|1|2 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) | ELECTRON MICROSCOPY | 3.1 | 1697 | |
| 76 | 6P5J|1|2 | Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) | ELECTRON MICROSCOPY | 3.1 | 1697 | |
| 77 | 7OYD|1|9 | Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b | ELECTRON MICROSCOPY | 2.3 | 1664 | |
| 78 | 6MTE|1|9 | Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state) | ELECTRON MICROSCOPY | 3.4 | 1664 | |
| 79 | 6MTD|1|9 | Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) | ELECTRON MICROSCOPY | 3.3 | 1692 | |
| 80 | 6W2S|1|A | Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the open state (Class 1) | ELECTRON MICROSCOPY | 3.47 | 1697 | |
| 81 | 7SYM|1|2 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII) | ELECTRON MICROSCOPY | 4.8 | 1697 | |
| 82 | 6D9J|1|2 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 1697 | |
| 83 | 7SYN|1|2 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII) | ELECTRON MICROSCOPY | 4 | 1697 | |
| 84 | 7SYV|1|2 | Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt) | ELECTRON MICROSCOPY | 3.9 | 1680 | |
| 85 | 7SYP|1|2 | Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt) | ELECTRON MICROSCOPY | 4 | 1680 | |
| 86 | 7SYQ|1|2 | Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt) | ELECTRON MICROSCOPY | 3.8 | 1680 | |
| 87 | 7SYO|1|2 | Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII) | ELECTRON MICROSCOPY | 4.6 | 1697 | |
| 88 | 6W2T|1|a | Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2) | ELECTRON MICROSCOPY | 3.36 | 1697 | |
| 89 | 5FLX|1|1 | Mammalian 40S HCV-IRES complex | ELECTRON MICROSCOPY | 3.9 | 1708 | |
| 90 | 6GZ3|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) | ELECTRON MICROSCOPY | 3.6 | 1708 | |
| 91 | 6GZ4|1|B1 | tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2) | ELECTRON MICROSCOPY | 3.6 | 1708 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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