RNA 3D Hub //

Equivalence class NR_all_33014.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3A (rep)Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)Electron microscopy3.22020-09-16
26KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF018463.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeElectron microscopy3.42020-08-05
36ZQG|1|D3Small subunit ribosomal RNA18S rRNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CElectron microscopy3.52020-09-23
46LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)Electron microscopy3.72020-09-16
57D4I|1|SASmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)Electron microscopy42021-10-06
66ZQD|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1Electron microscopy3.82020-09-23
77AJU|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)Electron microscopy3.82020-12-30
86LQS|1|SASmall subunit ribosomal RNA18S pre-rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)Electron microscopy3.82020-09-16
96LQQ|1|SA+ 6LQQ|1|5A+ 6LQQ|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)Electron microscopy4.12020-09-16
106ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4Small subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5ETS RNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2Electron microscopy3.92020-09-23
116ZQC|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1Electron microscopy3.82020-09-23
125WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2Small subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846The complete structure of the small subunit processomeElectron microscopy3.82017-09-27
137D5S|1|SA+ 7D5S|1|5A+ 7D5S|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiae S288CEukaryaRF01960 + RF01846Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)Electron microscopy4.62021-10-06
145WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S ribosomal RNA, 5ETS RNA, U3 RNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)Electron microscopy4.52017-03-29
157AJT|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)Electron microscopy4.62020-12-30
166LQT|1|SA+ 6LQT|1|3A+ 6LQT|1|5ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)Electron microscopy4.92020-09-16
176LQV|1|SA+ 6LQV|1|3A+ 6LQV|1|5ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)Electron microscopy4.82020-09-16
186ZQF|1|D3Small subunit ribosomal RNA18S rRNA, 5ETS RNA, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)Electron microscopy4.92020-09-23
197D5T|1|SASmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1)Electron microscopy62021-10-06
205TZS|1|1Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Architecture of the yeast small subunit processomeElectron microscopy5.12016-12-21
216ZQE|1|D3Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)Electron microscopy7.12020-09-23
226LQR|1|SA+ 6LQR|1|5A+ 6LQR|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S pre-rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)Electron microscopy8.62020-09-16
235WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S ribosomal RNA, 5ETS RNA, U3 RNASaccharomyces cerevisiaeEukaryaRF01960 + RF01846Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)Electron microscopy8.72017-03-29
247D63|1|SA+ 7D63|1|5A+ 7D63|1|3ASmall subunit ribosomal RNA + U3 small nucleolar RNA18S rRNA, 5' ETS, U3 snoRNASaccharomyces cerevisiae S288CEukaryaRF01960 + RF01846Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)Electron microscopy12.32021-10-06

Release history

Release3.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.230
Date2021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_33014.4NR_all_33014.33.199(20) 5TZS|1|1, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6LQS|1|SA, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6ZQC|1|D3, 6ZQD|1|D3, 6ZQE|1|D3, 6ZQF|1|D3, 6ZQG|1|D3, 7AJT|1|D3, 7AJU|1|D3(4) 7D4I|1|SA, 7D5S|1|SA+7D5S|1|5A+7D5S|1|3A, 7D5T|1|SA, 7D63|1|SA+7D63|1|5A+7D63|1|3A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_33014.4NR_all_03510.443.231(24) 5TZS|1|1, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A, 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6LQS|1|SA, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A, 6ZQB|1|D3+6ZQB|1|D2+6ZQB|1|D4, 6ZQC|1|D3, 6ZQD|1|D3, 6ZQE|1|D3, 6ZQF|1|D3, 6ZQG|1|D3, 7AJT|1|D3, 7AJU|1|D3, 7D4I|1|SA, 7D5S|1|SA+7D5S|1|5A+7D5S|1|3A, 7D5T|1|SA, 7D63|1|SA+7D63|1|5A+7D63|1|3A(0) (131) 3J6X|1|1S, 3J6Y|1|1S, 3J77|1|1S, 3J78|1|1S, 4U3M|1|2, 4U3M|1|6, 4U3N|1|2, 4U3N|1|6, 4U3U|1|2, 4U3U|1|6, 4U4N|1|2, 4U4N|1|6, 4U4O|1|2, 4U4O|1|6, 4U4Q|1|2, 4U4Q|1|6, 4U4R|1|2, 4U4R|1|6, 4U4U|1|2, 4U4U|1|6, 4U4Y|1|2, 4U4Y|1|6, 4U4Z|1|2, 4U4Z|1|6, 4U50|1|2, 4U50|1|6, 4U51|1|2, 4U51|1|6, 4U52|1|2, 4U52|1|6, 4U53|1|2, 4U53|1|6, 4U55|1|2, 4U55|1|6, 4U56|1|2, 4U56|1|6, 4U6F|1|2, 4U6F|1|6, 4V6I|1|CA, 4V7R|1|A1, 4V7R|1|C1, 4V88|1|A2, 4V88|1|A6, 4V8Y|1|B2, 4V8Z|1|B2, 5DAT|1|2, 5DAT|1|6, 5DC3|1|2, 5DC3|1|6, 5DGE|1|2, 5DGE|1|6, 5DGF|1|2, 5DGF|1|6, 5DGV|1|2, 5DGV|1|6, 5I4L|1|2, 5I4L|1|6, 5JUO|1|A, 5JUP|1|A, 5JUS|1|A, 5JUT|1|A, 5JUU|1|A, 5LL6|1|2, 5LYB|1|2, 5LYB|1|6, 5M1J|1|22, 5MC6|1|2, 5MEI|1|6, 5MEI|1|A, 5NDG|1|2, 5NDG|1|6, 5NDV|1|2, 5NDV|1|6, 5NDW|1|2, 5NDW|1|6, 5OBM|1|2, 5OBM|1|6, 5ON6|1|6, 5ON6|1|A, 5TBW|1|A, 5TBW|1|sR, 5TGA|1|2, 5TGA|1|6, 5TGM|1|2, 5TGM|1|6, 6EML|1|2, 6FAI|1|2, 6GQ1|1|2, 6GQB|1|2, 6GQV|1|2, 6HHQ|1|A, 6HHQ|1|sR, 6I7O|1|2, 6I7O|1|2b, 6Q8Y|1|2, 6RBD|1|2, 6RBE|1|2, 6S47|1|BA, 6SNT|1|2, 6SV4|1|2, 6SV4|1|2b, 6SV4|1|2c, 6T4Q|1|C2, 6T7I|1|C2, 6T7T|1|C2, 6T83|1|2b, 6T83|1|a, 6TB3|1|2, 6TNU|1|2, 6WOO|1|2, 6XIQ|1|2, 6XIR|1|2, 6Y7C|1|2, 6Z6J|1|C2, 6Z6K|1|C2, 6ZCE|1|A, 6ZU9|1|2, 6ZVI|1|h, 7A1G|1|2, 7B7D|1|2, 7MPI|1|B5, 7MPJ|1|B5, 7N8B|1|B5, 7NRC|1|S2, 7NRD|1|S2, 7OSA|1|18S, 7OSM|1|18S, 7PZY|1|A, 7Q0F|1|A, 7Q0P|1|A, 7RR5|1|C2

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3ACryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)ELECTRON MICROSCOPY4.51000
25WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3ACryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)ELECTRON MICROSCOPY8.71115
35TZS|1|1Architecture of the yeast small subunit processomeELECTRON MICROSCOPY5.1515
45WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2The complete structure of the small subunit processomeELECTRON MICROSCOPY3.81025
57D5S|1|SA+ 7D5S|1|5A+ 7D5S|1|3ACryo-EM structure of 90S preribosome with inactive Utp24 (state A2)ELECTRON MICROSCOPY4.6859
66LQU|1|SA+ 6LQU|1|5A+ 6LQU|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A1)ELECTRON MICROSCOPY3.71242
76LQV|1|SA+ 6LQV|1|3A+ 6LQV|1|5ACryo-EM structure of 90S small subunit preribosomes in transition states (State C1)ELECTRON MICROSCOPY4.8950
86LQR|1|SA+ 6LQR|1|5A+ 6LQR|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State C)ELECTRON MICROSCOPY8.61283
96LQQ|1|SA+ 6LQQ|1|5A+ 6LQQ|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State B)ELECTRON MICROSCOPY4.11323
106KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosomeELECTRON MICROSCOPY3.41310
116LQP|1|SA+ 6LQP|1|5A+ 6LQP|1|3ACryo-EM structure of 90S small subunit preribosomes in transition states (State A)ELECTRON MICROSCOPY3.21325
126ZQB|1|D3+ 6ZQB|1|D2+ 6ZQB|1|D4Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state B2ELECTRON MICROSCOPY3.91198
137AJT|1|D3Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)ELECTRON MICROSCOPY4.61327
146ZQC|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1ELECTRON MICROSCOPY3.81327
156LQT|1|SA+ 6LQT|1|3A+ 6LQT|1|5ACryo-EM structure of 90S small subunit preribosomes in transition states (State E)ELECTRON MICROSCOPY4.91155
166LQS|1|SACryo-EM structure of 90S small subunit preribosomes in transition states (State D)ELECTRON MICROSCOPY3.81249
177D63|1|SA+ 7D63|1|5A+ 7D63|1|3ACryo-EM structure of 90S preribosome with inactive Utp24 (state C)ELECTRON MICROSCOPY12.31331
187D4I|1|SACryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)ELECTRON MICROSCOPY41337
197D5T|1|SACryo-EM structure of 90S preribosome with inactive Utp24 (state F1)ELECTRON MICROSCOPY61189
207AJU|1|D3Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)ELECTRON MICROSCOPY3.81409
216ZQD|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1ELECTRON MICROSCOPY3.81409
226ZQE|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)ELECTRON MICROSCOPY7.11447
236ZQF|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)ELECTRON MICROSCOPY4.91392
246ZQG|1|D3Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-CELECTRON MICROSCOPY3.51387

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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