#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11Z7F|1|A (rep)5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'Crystal structure of 16 base pair RNA duplex containing a C-A mismatchX-ray diffraction2.12005-10-18
2405D|1|A+ 405D|1|BRNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3')STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHESX-ray diffraction2.51999-01-13
31Z79|1|A+ 1Z79|1|BRNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)X-ray diffraction2.552005-10-18
41YY0|1|A+ 1YY0|1|B5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3', 5'-R(*GP*CP*AP*GP*AP*(M5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatchX-ray diffraction3.22005-10-18
51YRM|1|A+ 1YRM|1|BDNA/RNA (5'-R(*GP*CP*AP*GP*A)-D(P*(A5M))-R(P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3')Crystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatchX-ray diffraction2.52005-10-18
61YY0|1|C5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'Crystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatchX-ray diffraction3.22005-10-18
71YRM|1|CDNA/RNA (5'-R(*GP*CP*AP*GP*A)-D(P*(A5M))-R(P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3')Crystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatchX-ray diffraction2.52005-10-18
81Z79|1|CRNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*AP*UP*CP*UP*GP*C)-3'Crystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)X-ray diffraction2.552005-10-18

Release history

Release2.1242.1252.1262.1272.1282.1292.1302.131
Date2017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_51779.2NR_all_51779.12.124(6) 1YY0|1|A+1YY0|1|B, 1YY0|1|C, 1Z79|1|A+1Z79|1|B, 1Z79|1|C, 1Z7F|1|A, 405D|1|A+405D|1|B(2) 1YRM|1|A+1YRM|1|B, 1YRM|1|C(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_51779.2NR_all_51779.32.132(6) 1YY0|1|A+1YY0|1|B, 1YY0|1|C, 1Z79|1|A+1Z79|1|B, 1Z79|1|C, 1Z7F|1|A, 405D|1|A+405D|1|B(2) 1YRM|1|A+1YRM|1|B, 1YRM|1|C(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
11Z79|1|A+ 1Z79|1|BCrystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)X-RAY DIFFRACTION2.5515
21YRM|1|A+ 1YRM|1|BCrystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatchX-RAY DIFFRACTION2.515
31YY0|1|A+ 1YY0|1|BCrystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatchX-RAY DIFFRACTION3.215
41YY0|1|CCrystal structure of an RNA duplex containing a 2'-amine substitution and a 2'-amide product produced by in-crystal acylation at a C-A mismatchX-RAY DIFFRACTION3.215
51Z7F|1|ACrystal structure of 16 base pair RNA duplex containing a C-A mismatchX-RAY DIFFRACTION2.116
61Z79|1|CCrystal structure of an RNA duplex containing site specific 2'-amine substitution at a C-A mismatch (at pH 5)X-RAY DIFFRACTION2.5515
71YRM|1|CCrystal Structure of an RNA duplex containing site specific 2'-amine substitutions at a C-A mismatchX-RAY DIFFRACTION2.515
8405D|1|A+ 405D|1|BSTRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHESX-RAY DIFFRACTION2.516

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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