RNA 3D Hub //

Equivalence class NR_all_68933.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19BUQ|1|AA+ 9BUQ|1|AC (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF02543 + RF00002Single particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)Electron microscopy2.333442025-05-28
29BUS|1|AA+ 9BUS|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF02543 + RF00002Single particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA)Electron microscopy2.433442025-05-28
39J9I|1|A+ 9J9I|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF02543 + RF00002High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNAElectron microscopy2.4633552025-06-04
49J9H|1|A+ 9J9H|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF02543 + RF00002High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNAElectron microscopy2.4533552025-06-04
59BUP|1|AA+ 9BUP|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF02543 + RF00002Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)Electron microscopy2.733442025-05-28
69BUU|1|AA+ 9BUU|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF02543 + RF00002Single particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNAElectron microscopy2.833442025-05-28
79BUT|1|AA+ 9BUT|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF02543 + RF00002Single particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)Electron microscopy2.833442025-05-28
88TPU|1|AA+ 8TPU|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparum 3D7EukaryaRF02543 + RF00002Subtomogram averaged consensus structure of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytesElectron microscopy4.133442024-08-14
95UMD|1|A+ 5UMD|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparumEukaryaRF02543 + RF00002Structure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquineElectron microscopy3.233422017-03-01
103J79|1|A+ 3J79|1|CLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparumEukaryaRF02543 + RF00002Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunitElectron microscopy3.233422014-07-16
113JBN|1|AA+ 3JBN|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparumEukaryaRF02543 + RF00002Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNAElectron microscopy4.733442015-10-14
123JBO|1|AA+ 3JBO|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparumEukaryaRF02543 + RF00002Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNAElectron microscopy5.833432015-10-14
133JBP|1|AA+ 3JBP|1|ACLarge subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAPlasmodium falciparumEukaryaRF02543 + RF00002Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNAElectron microscopy6.733442015-10-14

Release history

Release4.04.14.24.34.44.54.64.74.84.94.104.114.124.134.144.154.164.174.184.194.204.214.224.234.244.254.264.274.284.294.304.314.324.334.34
Date2025-08-132025-08-202025-08-272025-09-032025-09-102025-09-172025-09-242025-10-012025-10-082025-10-152025-10-222025-10-292025-11-052025-11-122025-11-192025-11-262025-12-032025-12-102025-12-172025-12-242025-12-312026-01-072026-01-142026-01-212026-01-282026-02-042026-02-112026-02-182026-02-252026-03-042026-03-112026-03-182026-03-252026-04-012026-04-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
13JBN|1|AA+ 3JBN|1|ACCryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNAELECTRON MICROSCOPY4.73344
23JBP|1|AA+ 3JBP|1|ACCryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNAELECTRON MICROSCOPY6.73344
38TPU|1|AA+ 8TPU|1|ACSubtomogram averaged consensus structure of the malarial 80S ribosome in Plasmodium falciparum-infected human erythrocytesELECTRON MICROSCOPY4.13344
49BUS|1|AA+ 9BUS|1|ACSingle particle CryoEM structure of the Pf80S ribosome in the unloaded state (nrt with E-site tRNA)ELECTRON MICROSCOPY2.43344
59BUQ|1|AA+ 9BUQ|1|ACSingle particle cryoEM structure of the Pf80S ribosome in the POST state (nrt with P- and E-site tRNA)ELECTRON MICROSCOPY2.33344
69BUP|1|AA+ 9BUP|1|ACSingle particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)ELECTRON MICROSCOPY2.73344
73J79|1|A+ 3J79|1|CCryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunitELECTRON MICROSCOPY3.23342
85UMD|1|A+ 5UMD|1|CStructure of the Plasmodium falciparum 80S ribosome bound to the antimalarial drug mefloquineELECTRON MICROSCOPY3.23342
99BUU|1|AA+ 9BUU|1|ACSingle particle CryoEM structure of the Pf80S ribosome in rotated state with E-site tRNAELECTRON MICROSCOPY2.83344
109BUT|1|AA+ 9BUT|1|ACSingle particle CryoEM structure of the Pf80S ribosome in the rotated-2 PRE state (rt state with P and E-site tRNA)ELECTRON MICROSCOPY2.83344
113JBO|1|AA+ 3JBO|1|ACCryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNAELECTRON MICROSCOPY5.83343
129J9I|1|A+ 9J9I|1|CHigh-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to E-tRNAELECTRON MICROSCOPY2.463355
139J9H|1|A+ 9J9H|1|CHigh-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNAELECTRON MICROSCOPY2.453355

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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