#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14PRF|1|B (rep)Hepatitis Delta virus ribozymeA Second Look at the HDV Ribozyme Structure and Dynamics.X-ray diffraction2.392014-10-29
22OJ3|1|BHDV RIBOZYMEHepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+)X-ray diffraction2.92007-03-27
31SJF|1|BHepatitis Delta virus ribozymeCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solutionX-ray diffraction2.752004-05-18
41VC0|1|BHepatitis Delta virus ribozymeCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solutionX-ray diffraction2.52004-05-18
51VC6|1|BHepatitis Delta virus ribozymeCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutionsX-ray diffraction2.82004-05-18
61VBZ|1|BHepatitis Delta virus ribozymeCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solutionX-ray diffraction2.82004-05-18
71SJ4|1|Rprecursor form of the Hepatitis Delta virus ribozymeHepatitis delta virusCrystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solutionX-ray diffraction2.72004-05-18
81SJ3|1|Rprecursor form of the Hepatitis Delta virus ribozymeHepatitis delta virusHepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ BoundX-ray diffraction2.22004-05-18
92OIH|1|BHDV ribozymeHepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+X-ray diffraction2.42007-03-27
101VC5|1|BHepatitis Delta virus ribozymeCrystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solutionX-ray diffraction3.42004-05-18
111VBY|1|BHepatitis Delta virus ribozymeCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ boundX-ray diffraction2.92004-05-18
121VBX|1|BHepatitis Delta virus ribozymeCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solutionX-ray diffraction2.72004-05-18
131DRZ|1|BRNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME)Hepatitis delta virusU1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEXX-ray diffraction2.31999-02-16

Release history

Release3.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.361
Date2020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_73165.3NR_all_73165.23.151(13) 1DRZ|1|B, 1SJ3|1|R, 1SJ4|1|R, 1SJF|1|B, 1VBX|1|B, 1VBY|1|B, 1VBZ|1|B, 1VC0|1|B, 1VC5|1|B, 1VC6|1|B, 2OIH|1|B, 2OJ3|1|B, 4PRF|1|B(0) (2) 1CX0|1|B, 1VC7|1|B

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14PRF|1|BA Second Look at the HDV Ribozyme Structure and Dynamics.X-RAY DIFFRACTION2.3975
22OIH|1|BHepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+X-RAY DIFFRACTION2.473
32OJ3|1|BHepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+)X-RAY DIFFRACTION2.973
41SJF|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solutionX-RAY DIFFRACTION2.7574
51VBX|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solutionX-RAY DIFFRACTION2.773
61SJ4|1|RCrystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solutionX-RAY DIFFRACTION2.773
71SJ3|1|RHepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ BoundX-RAY DIFFRACTION2.273
81VBY|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ boundX-RAY DIFFRACTION2.973
91VBZ|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solutionX-RAY DIFFRACTION2.873
101VC0|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solutionX-RAY DIFFRACTION2.573
111VC6|1|BCrystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutionsX-RAY DIFFRACTION2.872
121VC5|1|BCrystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solutionX-RAY DIFFRACTION3.470
131DRZ|1|BU1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEXX-RAY DIFFRACTION2.372

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0647 s