Equivalence class NR_all_73216.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WSM|1|1K (rep) | Transfer RNA | mRNA, tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 2 | 4WSM|1|2K | Transfer RNA | mRNA, tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 3 | 4WSM|1|2L | Transfer RNA | mRNA, tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 4 | 4WSM|1|1L | Transfer RNA | mRNA, tRNA-Leu | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 5 | 4V87|1|BB | MRNA, TRNA-LEU | synthetic construct | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 | |||
| 6 | 4V87|1|CB | MRNA, TRNA-LEU | synthetic construct | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 | |||
| 7 | 4V8B|1|AB | Transfer RNA | MRNA, TRNA-LEU | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 4V8C|1|CB | MRNA, TRNA-LEU | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||||
| 9 | 4V8C|1|DB | MRNA, TRNA-LEU | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||||
| 10 | 2NR0|1|E | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||||
| 11 | 2NR0|1|H | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||||
| 12 | 2NR0|1|F | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||||
| 13 | 2NRE|1|F | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 4 | 2007-05-15 | ||||
| 14 | 2NR0|1|G | leucyl tRNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||||
| 15 | 4V8B|1|CB | Transfer RNA | MRNA, TRNA-LEU | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 16 | 6HA1|1|x | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | Electron microscopy | 3.1 | 2018-08-29 |
| 17 | 6D9J|1|3 | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 18 | 6D90|1|3 | Transfer RNA | P-tRNA | Escherichia coli | Bacteria | RF00005 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 19 | 5KCR|1|1x | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | Electron microscopy | 3.6 | 2016-08-17 |
Release history
| Release | 3.97 |
|---|---|
| Date | 2019-10-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_73216.2 | NR_all_14663.1 | 3.97 | (5) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F | (14) 4V87|1|BB, 4V87|1|CB, 4V8B|1|AB, 4V8B|1|CB, 4V8C|1|CB, 4V8C|1|DB, 4WSM|1|1K, 4WSM|1|1L, 4WSM|1|2K, 4WSM|1|2L, 5KCR|1|1x, 6D90|1|3, 6D9J|1|3, 6HA1|1|x | (0) |
| NR_all_73216.2 | NR_all_73216.1 | 3.97 | (14) 4V87|1|BB, 4V87|1|CB, 4V8B|1|AB, 4V8B|1|CB, 4V8C|1|CB, 4V8C|1|DB, 4WSM|1|1K, 4WSM|1|1L, 4WSM|1|2K, 4WSM|1|2L, 5KCR|1|1x, 6D90|1|3, 6D9J|1|3, 6HA1|1|x | (5) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_73216.2 | NR_all_42604.1 | 3.98 | (5) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F | (14) 4V87|1|BB, 4V87|1|CB, 4V8B|1|AB, 4V8B|1|CB, 4V8C|1|CB, 4V8C|1|DB, 4WSM|1|1K, 4WSM|1|1L, 4WSM|1|2K, 4WSM|1|2L, 5KCR|1|1x, 6D90|1|3, 6D9J|1|3, 6HA1|1|x | (0) |
| NR_all_73216.2 | NR_all_73216.3 | 3.98 | (14) 4V87|1|BB, 4V87|1|CB, 4V8B|1|AB, 4V8B|1|CB, 4V8C|1|CB, 4V8C|1|DB, 4WSM|1|1K, 4WSM|1|1L, 4WSM|1|2K, 4WSM|1|2L, 5KCR|1|1x, 6D90|1|3, 6D9J|1|3, 6HA1|1|x | (5) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 2NRE|1|F | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 4 | 56 | |
| 2 | 2NR0|1|E | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 81 | |
| 3 | 2NR0|1|H | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 65 | |
| 4 | 2NR0|1|F | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 74 | |
| 5 | 2NR0|1|G | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 67 | |
| 6 | 6D90|1|3 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 87 | |
| 7 | 6D9J|1|3 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 87 | |
| 8 | 6HA1|1|x | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 87 | |
| 9 | 5KCR|1|1x | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | ELECTRON MICROSCOPY | 3.6 | 87 | |
| 10 | 4V8C|1|CB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 | |
| 11 | 4V87|1|BB | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 | |
| 12 | 4V8B|1|AB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 | |
| 13 | 4WSM|1|1K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 | |
| 14 | 4V8C|1|DB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 | |
| 15 | 4V87|1|CB | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 | |
| 16 | 4V8B|1|CB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 | |
| 17 | 4WSM|1|1L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 | |
| 18 | 4WSM|1|2L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 74 | |
| 19 | 4WSM|1|2K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 73 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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