Equivalence class NR_all_76090.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8FR8|1|A (rep) | Large subunit ribosomal RNA | 23S rRNA (3119-MER) | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF02541 | Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex | Electron microscopy | 2.76 | 2023-05-17 |
| 2 | 7S0S|1|C | Large subunit ribosomal RNA | 23S rRNA | Mycolicibacterium smegmatis | Bacteria | RF02541 | M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit | Electron microscopy | 3.05 | 2022-03-30 |
| 3 | 5O60|1|A | Large subunit ribosomal RNA | 23S rRNA, tRNA CCA-end acetylated (Phe) | Mycolicibacterium smegmatis | Bacteria | RF02541 | Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis | Electron microscopy | 3.18 | 2017-07-12 |
| 4 | 5ZET|1|A | Large subunit ribosomal RNA | 23S rRNA | Mycolicibacterium smegmatis | Bacteria | RF02541 | M. smegmatis P/P state 50S ribosomal subunit | Electron microscopy | 3.2 | 2018-09-26 |
| 5 | 7XAM|1|A | Large subunit ribosomal RNA | 23S rRNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF02541 | Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth | Electron microscopy | 3.5 | 2023-05-03 |
| 6 | 6DZP|1|A | Large subunit ribosomal RNA | 23S rRNA | Mycolicibacterium smegmatis | Bacteria | RF02541 | Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit | Electron microscopy | 3.42 | 2018-10-03 |
| 7 | 6DZI|1|A | Large subunit ribosomal RNA | 23 S rRNA (3119-MER) | Mycolicibacterium smegmatis | Bacteria | RF02541 | Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex | Electron microscopy | 3.46 | 2018-09-26 |
| 8 | 5ZEB|1|A | Large subunit ribosomal RNA | 23S rRNA | Mycolicibacterium smegmatis | Bacteria | RF02541 | M. Smegmatis P/P state 70S ribosome structure | Electron microscopy | 3.4 | 2018-09-26 |
| 9 | 5XYM|1|A | Large subunit ribosomal RNA | 23S RNA | Mycolicibacterium smegmatis | Bacteria | RF02541 | Large subunit of Mycobacterium smegmatis | Electron microscopy | 3.08 | 2017-09-27 |
| 10 | 5ZEP|1|A | Large subunit ribosomal RNA | 23S rRNA | Mycolicibacterium smegmatis | Bacteria | RF02541 | M. smegmatis hibernating state 70S ribosome structure | Electron microscopy | 3.4 | 2018-09-26 |
| 11 | 7Y41|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Mycolicibacterium smegmatis MC2 155 | Bacteria | RF02541 | Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth | Electron microscopy | 4.1 | 2023-05-03 |
Release history
| Release | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7Y41|1|A | Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth | ELECTRON MICROSCOPY | 4.1 | 3119 | |
| 2 | 7S0S|1|C | M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.05 | 3118 | |
| 3 | 5XYM|1|A | Large subunit of Mycobacterium smegmatis | ELECTRON MICROSCOPY | 3.08 | 2665 | |
| 4 | 6DZP|1|A | Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.42 | 3119 | |
| 5 | 6DZI|1|A | Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex | ELECTRON MICROSCOPY | 3.46 | 3119 | |
| 6 | 5O60|1|A | Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis | ELECTRON MICROSCOPY | 3.18 | 3119 | |
| 7 | 8FR8|1|A | Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex | ELECTRON MICROSCOPY | 2.76 | 3119 | |
| 8 | 5ZEB|1|A | M. Smegmatis P/P state 70S ribosome structure | ELECTRON MICROSCOPY | 3.4 | 3102 | |
| 9 | 5ZET|1|A | M. smegmatis P/P state 50S ribosomal subunit | ELECTRON MICROSCOPY | 3.2 | 3102 | |
| 10 | 5ZEP|1|A | M. smegmatis hibernating state 70S ribosome structure | ELECTRON MICROSCOPY | 3.4 | 3102 | |
| 11 | 7XAM|1|A | Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth | ELECTRON MICROSCOPY | 3.5 | 3062 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: