Equivalence class NR_all_76251.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7P6Z|1|4 (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | Mycoplasma pneumoniae 70S ribosome in untreated cells | Electron microscopy | 3.5 | 2022-05-25 |
| 2 | 7OOD|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells | Electron microscopy | 3.4 | 2022-05-25 |
| 3 | 7PIB|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 4.7 | 2022-05-25 |
| 4 | 7PAL|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 4.7 | 2022-05-25 |
| 5 | 7PHB|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | Electron microscopy | 4.9 | 2022-05-25 |
| 6 | 7PAK|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells | Electron microscopy | 5.3 | 2022-05-25 |
| 7 | 7PIT|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 5.7 | 2022-05-25 |
| 8 | 7PI9|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 6.3 | 2022-05-25 |
| 9 | 7PAI|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells | Electron microscopy | 6.7 | 2022-05-25 |
| 10 | 7PAM|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 6.8 | 2022-05-25 |
| 11 | 7PAO|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 7 | 2022-05-25 |
| 12 | 7PAJ|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 7.3 | 2022-05-25 |
| 13 | 7PAR|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 8.2 | 2022-05-25 |
| 14 | 7PHA|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | Electron microscopy | 8.5 | 2022-05-25 |
| 15 | 7PAU|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells | Electron microscopy | 8.3 | 2022-05-25 |
| 16 | 7PH9|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | Electron microscopy | 8.7 | 2022-05-25 |
| 17 | 7PI8|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 8.9 | 2022-05-25 |
| 18 | 7PAQ|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 8.9 | 2022-05-25 |
| 19 | 7PIC|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.1 | 2022-05-25 |
| 20 | 7PIP|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.3 | 2022-05-25 |
| 21 | 7PAH|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 9.5 | 2022-05-25 |
| 22 | 7PIO|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.5 | 2022-05-25 |
| 23 | 7PAT|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | free 50S in untreated Mycoplasma pneumoniae cells | Electron microscopy | 9.2 | 2022-05-25 |
| 24 | 7PIQ|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.7 | 2022-05-25 |
| 25 | 7PAN|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | Electron microscopy | 9.7 | 2022-05-25 |
| 26 | 7PHC|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | Electron microscopy | 9.9 | 2022-05-25 |
| 27 | 7PIR|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 12.1 | 2022-05-25 |
| 28 | 7PIA|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 13.6 | 2022-05-25 |
| 29 | 7PIS|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | Electron microscopy | 15 | 2022-05-25 |
| 30 | 7PAS|1|4 | 5S ribosomal RNA | 5S ribosomal RNA | Mycoplasma pneumoniae M129 | Bacteria | RF00001 | 70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells | Electron microscopy | 16 | 2022-05-25 |
Release history
| Release | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 |
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| Date | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7PIC|1|4 | 70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.1 | 105 | |
| 2 | 7PH9|1|4 | 70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.7 | 105 | |
| 3 | 7PHA|1|4 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.5 | 105 | |
| 4 | 7PI8|1|4 | 70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.9 | 105 | |
| 5 | 7PAT|1|4 | free 50S in untreated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.2 | 105 | |
| 6 | 7PIP|1|4 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.3 | 105 | |
| 7 | 7PAR|1|4 | 70S ribosome with EF-G, P- and E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.2 | 105 | |
| 8 | 7PAU|1|4 | free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.3 | 105 | |
| 9 | 7PAO|1|4 | 70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 7 | 105 | |
| 10 | 7PAJ|1|4 | 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 7.3 | 105 | |
| 11 | 7PI9|1|4 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 6.3 | 105 | |
| 12 | 7PAM|1|4 | 70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 6.8 | 105 | |
| 13 | 7PAI|1|4 | 70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 6.7 | 105 | |
| 14 | 7P6Z|1|4 | Mycoplasma pneumoniae 70S ribosome in untreated cells | ELECTRON MICROSCOPY | 3.5 | 105 | |
| 15 | 7OOD|1|4 | Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells | ELECTRON MICROSCOPY | 3.4 | 105 | |
| 16 | 7PAL|1|4 | 70S ribosome with A- and P-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 4.7 | 105 | |
| 17 | 7PHB|1|4 | 70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 4.9 | 105 | |
| 18 | 7PAK|1|4 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 5.3 | 105 | |
| 19 | 7PIT|1|4 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 5.7 | 105 | |
| 20 | 7PIB|1|4 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 4.7 | 105 | |
| 21 | 7PAQ|1|4 | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 8.9 | 105 | |
| 22 | 7PIO|1|4 | 70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.5 | 105 | |
| 23 | 7PAN|1|4 | 70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.7 | 105 | |
| 24 | 7PIQ|1|4 | 70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.7 | 105 | |
| 25 | 7PAH|1|4 | 70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.5 | 105 | |
| 26 | 7PHC|1|4 | 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 9.9 | 105 | |
| 27 | 7PIR|1|4 | 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 12.1 | 105 | |
| 28 | 7PIA|1|4 | 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 13.6 | 105 | |
| 29 | 7PIS|1|4 | 70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 15 | 105 | |
| 30 | 7PAS|1|4 | 70S ribosome with P/E-site tRNA in Mycoplasma pneumoniae cells | ELECTRON MICROSCOPY | 16 | 105 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: