RNA 3D Hub //

Equivalence class NR_all_78541.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
19AXU|1|2+ 9AXU|1|4 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNASchizosaccharomyces pombeEukaryaRF02543 + RF00002Non-translating S. pombe ribosome large subunitElectron microscopy1.9433692024-10-16
29AXT|1|B2+ 9AXT|1|B4Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNASchizosaccharomyces pombeEukaryaRF02543 + RF00002Non-translating S. pombe ribosomeElectron microscopy2.433692024-10-16
39AXV|1|B2+ 9AXV|1|B4Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNASchizosaccharomyces pombeEukaryaRF02543 + RF00002Translating S. pombe ribosomeElectron microscopy2.433692024-10-16
48EUG|1|1+ 8EUG|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (152-MER), RNA (2863-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome State 3Electron microscopy2.830202022-11-30
58EUI|1|1+ 8EUI|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (152-MER), RNA (2863-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome (-fkbp39) State 3Electron microscopy3.130132022-11-30
68ESQ|1|1+ 8ESQ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (150-MER), RNA (2231-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome State 2Electron microscopy2.823802022-11-30
78ETC|1|1+ 8ETC|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (147-MER), RNA (2151-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Fkbp39 associated nascent 60S ribosome State 4Electron microscopy3.122872022-11-30
88ESR|1|1+ 8ESR|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (150-MER), RNA (2142-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome (-fkbp39) State 2Electron microscopy3.222932022-11-30
98ETG|1|1+ 8ETG|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (146-MER), RNA (1912-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Fkbp39 associated 60S nascent ribosome State 3Electron microscopy3.421642022-11-30
108ETJ|1|1+ 8ETJ|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (144-MER), RNA (1758-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Fkbp39 associated 60S nascent ribosome State 2Electron microscopy3.219612022-11-30
118EV3|1|1+ 8EV3|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (1452-MER), RNA (150-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1BElectron microscopy316022022-11-30
128EUP|1|1+ 8EUP|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (1422-MER), RNA (146-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated 60S nascent ribosome State 1AElectron microscopy3.115682022-11-30
138EUY|1|1+ 8EUY|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (1095-MER), RNA (148-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated nascent 60S ribosome (-fkbp39) State 1AElectron microscopy315632022-11-30
148ETI|1|1+ 8ETI|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (152-MER), RNA (1564-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Fkbp39 associated 60S nascent ribosome State 1Electron microscopy3.717312022-11-30
158ETH|1|1+ 8ETH|1|2Large subunit ribosomal RNA + 5.8S ribosomal RNARNA (1263-MER), RNA (130-MER)Schizosaccharomyces pombeEukaryaRF02543 + RF00002Ytm1 associated 60S nascent ribosome State 1BElectron microscopy3.814332022-11-30

Release history

Release3.3813.382
Date2025-04-022025-04-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
18EUY|1|1+ 8EUY|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 1AELECTRON MICROSCOPY31563
28EV3|1|1+ 8EV3|1|2Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1BELECTRON MICROSCOPY31602
38EUP|1|1+ 8EUP|1|2Ytm1 associated 60S nascent ribosome State 1AELECTRON MICROSCOPY3.11568
48ETH|1|1+ 8ETH|1|2Ytm1 associated 60S nascent ribosome State 1BELECTRON MICROSCOPY3.81433
58ETI|1|1+ 8ETI|1|2Fkbp39 associated 60S nascent ribosome State 1ELECTRON MICROSCOPY3.71731
68ESR|1|1+ 8ESR|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 2ELECTRON MICROSCOPY3.22293
78ESQ|1|1+ 8ESQ|1|2Ytm1 associated nascent 60S ribosome State 2ELECTRON MICROSCOPY2.82380
88ETG|1|1+ 8ETG|1|2Fkbp39 associated 60S nascent ribosome State 3ELECTRON MICROSCOPY3.42164
98ETJ|1|1+ 8ETJ|1|2Fkbp39 associated 60S nascent ribosome State 2ELECTRON MICROSCOPY3.21961
108ETC|1|1+ 8ETC|1|2Fkbp39 associated nascent 60S ribosome State 4ELECTRON MICROSCOPY3.12287
118EUI|1|1+ 8EUI|1|2Ytm1 associated nascent 60S ribosome (-fkbp39) State 3ELECTRON MICROSCOPY3.13013
128EUG|1|1+ 8EUG|1|2Ytm1 associated nascent 60S ribosome State 3ELECTRON MICROSCOPY2.83020
139AXU|1|2+ 9AXU|1|4Non-translating S. pombe ribosome large subunitELECTRON MICROSCOPY1.943369
149AXT|1|B2+ 9AXT|1|B4Non-translating S. pombe ribosomeELECTRON MICROSCOPY2.43369
159AXV|1|B2+ 9AXV|1|B4Translating S. pombe ribosomeELECTRON MICROSCOPY2.43369

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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