Equivalence class NR_all_80570.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4EJT|1|G (rep) | 5'-R(*AP*A)-3' | Staphylococcus epidermidis TcaR in complex with RNA | X-ray diffraction | 3 | 2 | 2013-06-05 | ||||
| 2 | 3J0L|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1 | Electron microscopy | 9.8 | 2 | 2011-11-16 | |||
| 3 | 3J0O|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2 | Electron microscopy | 9 | 2 | 2011-11-16 | |||
| 4 | 3J0Q|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2 | Electron microscopy | 10.6 | 2 | 2011-11-16 | |||
| 5 | 3J0P|1|w | mRNA fragment | Oryctolagus cuniculus | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1 | Electron microscopy | 10.6 | 2 | 2011-11-16 |
Release history
| Release | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_80570.2 | NR_20.0_80570.3 | 2.55 | (5) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w, 4EJT|1|G | (0) | (2) 5CEU|1|C, 5CEU|1|D |
| NR_all_80570.2 | NR_3.0_80570.3 | 2.55 | (1) 4EJT|1|G | (4) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w | (2) 5CEU|1|C, 5CEU|1|D |
| NR_all_80570.2 | NR_3.5_80570.3 | 2.55 | (1) 4EJT|1|G | (4) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w | (2) 5CEU|1|C, 5CEU|1|D |
| NR_all_80570.2 | NR_4.0_80570.3 | 2.55 | (1) 4EJT|1|G | (4) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w | (2) 5CEU|1|C, 5CEU|1|D |
| NR_all_80570.2 | NR_all_80570.3 | 2.55 | (5) 3J0L|1|w, 3J0O|1|w, 3J0P|1|w, 3J0Q|1|w, 4EJT|1|G | (0) | (2) 5CEU|1|C, 5CEU|1|D |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 3J0O|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2 | ELECTRON MICROSCOPY | 9 | 2 | |
| 2 | 3J0P|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1 | ELECTRON MICROSCOPY | 10.6 | 2 | |
| 3 | 3J0L|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1 | ELECTRON MICROSCOPY | 9.8 | 2 | |
| 4 | 3J0Q|1|w | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2 | ELECTRON MICROSCOPY | 10.6 | 2 | |
| 5 | 4EJT|1|G | Staphylococcus epidermidis TcaR in complex with RNA | X-RAY DIFFRACTION | 3 | 2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: