Equivalence class NR_all_82132.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6CMN|1|D (rep) | Trans-Activation Response RNA Element | Human immunodeficiency virus 1 | Co-Crystal Structure of HIV-1 TAR Bound to Lab-Evolved RRM TBP6.7 | X-ray diffraction | 1.8 | 2018-06-06 | |||
| 2 | 6CYT|1|N | RNA (5'-R(P*AP*UP*CP*UP*GP*AP*GP*CP*CP*UP*GP*GP*GP*AP*GP*CP*U)-3') | Human immunodeficiency virus 1 | HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb | X-ray diffraction | 3.5 | 2018-12-12 | |||
| 3 | 5L1Z|1|N | RNA (5'-R(P*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*U)-3') | Human immunodeficiency virus 1 | TAR complex with HIV-1 Tat-AFF4-P-TEFb | X-ray diffraction | 5.9 | 2016-10-26 | |||
| 4 | 6MCE|1|A | TAR RNA | Human immunodeficiency virus 1 | Solution structure of HIV-1 TAR with Tat RNA Binding Domain | Solution NMR | 2018-10-31 | ||||
| 5 | 6D2U|1|B | RNA (29-MER) | synthetic construct | Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA | Solution NMR | 2018-12-12 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_82132.1 | NR_all_07356.1 | 3.59 | (1) 6MCE|1|A | (4) 5L1Z|1|N, 6CMN|1|D, 6CYT|1|N, 6D2U|1|B | (0) |
| NR_all_82132.1 | NR_all_32911.1 | 3.59 | (3) 5L1Z|1|N, 6CMN|1|D, 6CYT|1|N | (2) 6D2U|1|B, 6MCE|1|A | (0) |
| NR_all_82132.1 | NR_all_87910.1 | 3.59 | (1) 6D2U|1|B | (4) 5L1Z|1|N, 6CMN|1|D, 6CYT|1|N, 6MCE|1|A | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5L1Z|1|N | TAR complex with HIV-1 Tat-AFF4-P-TEFb | X-RAY DIFFRACTION | 5.9 | 21 | |
| 2 | 6CMN|1|D | Co-Crystal Structure of HIV-1 TAR Bound to Lab-Evolved RRM TBP6.7 | X-RAY DIFFRACTION | 1.8 | 27 | |
| 3 | 6D2U|1|B | Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA | SOLUTION NMR | 29 | ||
| 4 | 6MCE|1|A | Solution structure of HIV-1 TAR with Tat RNA Binding Domain | SOLUTION NMR | 30 | ||
| 5 | 6CYT|1|N | HIV-1 TAR loop in complex with Tat:AFF4:P-TEFb | X-RAY DIFFRACTION | 3.5 | 17 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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