Equivalence class NR_all_90633.9 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WF9|1|X (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-ray diffraction | 3.43 | 2712 | 2015-10-21 |
| 2 | 5HL7|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-ray diffraction | 3.55 | 2705 | 2016-12-21 |
| 3 | 4WFA|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-ray diffraction | 3.39 | 2711 | 2015-10-21 |
| 4 | 5HKV|1|X | Large subunit ribosomal RNA | 23s ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-ray diffraction | 3.66 | 2695 | 2017-05-03 |
| 5 | 4WCE|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-ray diffraction | 3.53 | 2708 | 2015-10-21 |
| 6 | 4WFB|1|X | Large subunit ribosomal RNA | 23S rRNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-ray diffraction | 3.43 | 2707 | 2015-10-21 |
| 7 | 5NRG|1|X | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-ray diffraction | 3.44 | 2710 | 2017-08-09 |
| 8 | 5NGM|1|AA | Large subunit ribosomal RNA | 23S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2905 | 2017-10-04 |
| 9 | 5T7V|1|B | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | Electron microscopy | 3.6 | 2768 | 2017-05-31 |
| 10 | 5ND8|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | Electron microscopy | 3.7 | 2912 | 2017-06-28 |
| 11 | 5ND9|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | Electron microscopy | 3.7 | 2914 | 2017-06-28 |
| 12 | 5LI0|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Staphylococcus aureus | Bacteria | RF02541 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.8 | 2914 | 2016-12-28 |
| 13 | 5TCU|1|B | Large subunit ribosomal RNA | 23S RRNA | Staphylococcus aureus | Bacteria | RF02541 | Methicillin sensitive Staphylococcus aureus 70S ribosome | Electron microscopy | 3.9 | 2755 | 2017-05-24 |
| 14 | 5NG8|1|BA | 23S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2905 | 2017-10-04 | ||||
| 15 | 5NG8|1|AA | 23S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2905 | 2017-10-04 |
Release history
| Release | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_90633.9 | NR_all_90633.10 | 3.14 | (15) 4WCE|1|X, 4WF9|1|X, 4WFA|1|X, 4WFB|1|X, 5HKV|1|X, 5HL7|1|X, 5LI0|1|A, 5ND8|1|A, 5ND9|1|A, 5NG8|1|AA, 5NG8|1|BA, 5NGM|1|AA, 5NRG|1|X, 5T7V|1|B, 5TCU|1|B | (0) | (2) 6FXC|1|AA, 6FXC|1|BA |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 5NG8|1|AA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2905 | |
| 2 | 5NGM|1|AA | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 2905 | |
| 3 | 5NG8|1|BA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 2905 | |
| 4 | 5NRG|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 2710 | |
| 5 | 5HKV|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 2695 | |
| 6 | 5HL7|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 2705 | |
| 7 | 4WCE|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 2708 | |
| 8 | 4WFA|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 2711 | |
| 9 | 4WFB|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 2707 | |
| 10 | 4WF9|1|X | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 2712 | |
| 11 | 5LI0|1|A | 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 2914 | |
| 12 | 5ND8|1|A | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 2912 | |
| 13 | 5ND9|1|A | Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 2914 | |
| 14 | 5TCU|1|B | Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 2755 | |
| 15 | 5T7V|1|B | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 2768 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: