Equivalence class NR_all_92412.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8S1P|1|a (rep) | Transfer RNA | P-tRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | YlmH bound to PtRNA-50S | Electron microscopy | 1.96 | 2024-06-12 |
| 2 | 7AQC|1|T | Transfer RNA | Ala-tRNA (P-site) | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Structure of the bacterial RQC complex (Decoding State) | Electron microscopy | 2.99 | 2020-11-25 |
| 3 | 7AQD|1|T | Transfer RNA | Ala-tRNA (A/P-site) | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Structure of the bacterial RQC complex (Translocating State) | Electron microscopy | 3.1 | 2020-11-25 |
| 4 | 7AQC|1|P | Transfer RNA | Ala-tRNA (P-site) | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Structure of the bacterial RQC complex (Decoding State) | Electron microscopy | 2.99 | 2020-11-25 |
| 5 | 7AS8|1|2 | Transfer RNA | tRNA-Ala-1-1 | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | Electron microscopy | 2.9 | 2020-12-09 |
| 6 | 7AS9|1|2 | Transfer RNA | tRNA-Ala-1-1 | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | Electron microscopy | 3.5 | 2020-12-23 |
| 7 | 7OPE|1|2 | Transfer RNA | tRNA-Ala-UGC | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) | Electron microscopy | 3.2 | 2021-07-21 |
| 8 | 8S1U|1|a | Transfer RNA | P-tRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | YlmH bound to stalled 50S subunits with RqcH and PtRNA | Electron microscopy | 3.4 | 2024-06-12 |
| 9 | 8S1U|1|c | Transfer RNA | P-tRNA | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | YlmH bound to stalled 50S subunits with RqcH and PtRNA | Electron microscopy | 3.4 | 2024-06-12 |
| 10 | 7ASA|1|2 | Transfer RNA | tRNA-Ala-1-1 | Bacillus subtilis subsp. subtilis str. 168 | Bacteria | RF00005 | Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | Electron microscopy | 3.5 | 2020-12-23 |
Release history
| Release | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 | 3.352 | 3.353 | 3.354 | 3.355 | 3.356 | 3.357 | 3.358 | 3.359 | 3.360 | 3.361 | 3.362 | 3.363 | 3.364 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 | 2024-09-11 | 2024-09-18 | 2024-09-25 | 2024-10-02 | 2024-10-09 | 2024-10-16 | 2024-10-23 | 2024-10-30 | 2024-11-06 | 2024-11-13 | 2024-11-20 | 2024-11-27 | 2024-12-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 7AQC|1|T | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 76 | |
| 2 | 8S1U|1|c | YlmH bound to stalled 50S subunits with RqcH and PtRNA | ELECTRON MICROSCOPY | 3.4 | 66 | |
| 3 | 7AQD|1|T | Structure of the bacterial RQC complex (Translocating State) | ELECTRON MICROSCOPY | 3.1 | 76 | |
| 4 | 7AQC|1|P | Structure of the bacterial RQC complex (Decoding State) | ELECTRON MICROSCOPY | 2.99 | 69 | |
| 5 | 7OPE|1|2 | RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement) | ELECTRON MICROSCOPY | 3.2 | 70 | |
| 6 | 7AS9|1|2 | Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH. | ELECTRON MICROSCOPY | 3.5 | 75 | |
| 7 | 8S1U|1|a | YlmH bound to stalled 50S subunits with RqcH and PtRNA | ELECTRON MICROSCOPY | 3.4 | 69 | |
| 8 | 8S1P|1|a | YlmH bound to PtRNA-50S | ELECTRON MICROSCOPY | 1.96 | 69 | |
| 9 | 7AS8|1|2 | Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 2.9 | 73 | |
| 10 | 7ASA|1|2 | Bacillus subtilis ribosome-associated quality control complex state B, multibody refinement focussed on RqcH. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO | ELECTRON MICROSCOPY | 3.5 | 34 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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