#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
17QI4|1|AA (rep)Small subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.219542022-07-13
28RRI|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with antibiotic tigecyclineElectron microscopy2.49542025-03-12
37P2E|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycinElectron microscopy2.49552022-07-27
46ZM6|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.599542021-01-13
57QI5|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionElectron microscopy2.639542023-07-05
67PNX|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation aElectron microscopy2.769512022-06-15
78ANY|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAElectron microscopy2.859542023-08-16
88CSS|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State D)Electron microscopy2.368462022-12-14
96ZM5|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.899542021-01-13
107QI6|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.989542023-05-17
117PO3|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome small subunitElectron microscopy2.929552022-06-15
127PO1|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Initiation complex of human mitochondrial ribosome small subunit with IF3Electron microscopy2.929552022-06-15
137PO0|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3Electron microscopy2.99512022-06-15
146RW4|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF3Electron microscopy2.979552020-06-03
158OIS|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF0017728S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy39552023-06-14
166VMI|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.969442020-08-05
178K2A|1|S1Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Cryo-EM structure of the human 55S mitoribosome with TigecyclineElectron microscopy2.99282024-07-10
186VLZ|1|AASmall subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.979442020-08-05
198CSR|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State C)Electron microscopy2.548532022-12-14
208QRN|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensEukaryaRF00177mt-SSU in GTPBP8 knock-out cells, state 4Electron microscopy2.989552024-06-26
218OIR|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF0017755S human mitochondrial ribosome with mtRF1 and P-site tRNAElectron microscopy3.19552023-06-14
228QRM|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensEukaryaRF00177mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3Electron microscopy3.059552024-06-26
237PO2|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Initiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNAElectron microscopy3.099552022-06-15
247PNY|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation bElectron microscopy3.069512022-06-15
259G5D|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit (State C)Electron microscopy39172025-04-23
267PNZ|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation cElectron microscopy3.099512022-06-15
276RW5|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Structure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3Electron microscopy3.149552020-06-03
288CST|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State E)Electron microscopy2.858882022-12-14
298CSQ|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State B)Electron microscopy2.548022022-12-14
309G5C|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit (State B)Electron microscopy38902025-04-23
318XT0|1|S1Small subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineElectron microscopy3.29282024-07-10
329HFM|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Translation-initiation state of human mitochondrial ribosome small subunit (State D)Electron microscopy38962025-04-23
339HFO|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Translation-initiation state of human mitochondrial ribosome small subunit (State G)Electron microscopy3.19092025-04-23
348QRL|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensEukaryaRF00177mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2Electron microscopy3.349512024-06-26
358XT2|1|S1Small subunit ribosomal RNA12s rRNAHomo sapiensMitochondriaRF00177Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineElectron microscopy3.39282024-07-10
368CSU|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State C*)Electron microscopy3.038812022-12-14
377L08|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.Electron microscopy3.499442021-05-12
388CSP|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial small subunit assembly intermediate (State A)Electron microscopy2.667372022-12-14
399G5E|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Translation-initiation state of human mitochondrial ribosome small subunit (State F)Electron microscopy3.28962025-04-23
409HFN|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Translation-initiation state of human mitochondrial ribosome small subunit (State E)Electron microscopy3.38962025-04-23
417A5I|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitoribosome with A- P-and E-site mt-tRNAsElectron microscopy3.79282020-12-23
427A5K|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitoribosome in the post translocation state bound to mtEF-G1Electron microscopy3.79282020-12-23
436ZSC|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with E-site tRNAElectron microscopy3.59272020-09-16
446ZSD|1|AASmall subunit ribosomal RNA12SrRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAElectron microscopy3.79272020-09-16
459G5B|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Assembly intermediate of human mitochondrial ribosome small subunit (State A)Electron microscopy3.28162025-04-23
463J9M|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the human mitochondrial ribosome (class 1)Electron microscopy3.59232015-04-15
477OG4|1|AASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with P/E-tRNAElectron microscopy3.89242021-06-23
486ZSA|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAElectron microscopy49272020-10-21
496ZSG|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAElectron microscopy49272020-10-14
506ZS9|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with ribosome recycling factorElectron microscopy49272020-10-14
517A5G|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAElectron microscopy4.339282020-12-23
526NU2|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy3.99232019-04-17
537A5F|1|A6Small subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsElectron microscopy4.49282020-12-23
546ZSB|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA and P-site tRNAElectron microscopy4.59272020-09-16
556NU3|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Structural insights into unique features of the human mitochondrial ribosome recyclingElectron microscopy4.49232019-04-17
566ZSE|1|AASmall subunit ribosomal RNA12S rRNAHomo sapiensMitochondriaRF00177Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAElectron microscopy59272020-09-16
578QRK|1|ASmall subunit ribosomal RNA12S mitochondrial rRNAHomo sapiensEukaryaRF00177mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1Electron microscopy6.699552024-06-26

Release history

Release3.384
Date2025-04-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
17PNY|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation bELECTRON MICROSCOPY3.06951
26NU3|1|AAStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY4.4923
36NU2|1|AAStructural insights into unique features of the human mitochondrial ribosome recyclingELECTRON MICROSCOPY3.9923
46VLZ|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.97944
56VMI|1|AAStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.96944
67L08|1|AACryo-EM structure of the human 55S mitoribosome-RRFmt complex.ELECTRON MICROSCOPY3.49944
77A5K|1|A6Structure of the human mitoribosome in the post translocation state bound to mtEF-G1ELECTRON MICROSCOPY3.7928
87A5F|1|A6Structure of the stalled human mitoribosome with P- and E-site mt-tRNAsELECTRON MICROSCOPY4.4928
97A5I|1|A6Structure of the human mitoribosome with A- P-and E-site mt-tRNAsELECTRON MICROSCOPY3.7928
107A5G|1|A6Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNAELECTRON MICROSCOPY4.33928
113J9M|1|AAStructure of the human mitochondrial ribosome (class 1)ELECTRON MICROSCOPY3.5923
128K2A|1|S1Cryo-EM structure of the human 55S mitoribosome with TigecyclineELECTRON MICROSCOPY2.9928
138XT2|1|S1Cryo-EM structure of the human 55S mitoribosome with 10uM TigecyclineELECTRON MICROSCOPY3.3928
148XT0|1|S1Cryo-EM structure of the human 55S mitoribosome with 5um TigecyclineELECTRON MICROSCOPY3.2928
158OIS|1|AA28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY3955
168OIR|1|AA55S human mitochondrial ribosome with mtRF1 and P-site tRNAELECTRON MICROSCOPY3.1955
177QI6|1|AAHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.98954
187QI4|1|AAHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.21954
198ANY|1|AAHuman mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNAELECTRON MICROSCOPY2.85954
207QI5|1|AAHuman mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionELECTRON MICROSCOPY2.63954
216ZM6|1|AAHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.59954
226ZM5|1|AAHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.89954
238RRI|1|AAHuman mitochondrial ribosome in complex with antibiotic tigecyclineELECTRON MICROSCOPY2.4954
246ZSG|1|AAHuman mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY4927
256ZSA|1|AAHuman mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNAELECTRON MICROSCOPY4927
266ZSD|1|AAHuman mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNAELECTRON MICROSCOPY3.7927
276ZSB|1|AAHuman mitochondrial ribosome in complex with mRNA and P-site tRNAELECTRON MICROSCOPY4.5927
286ZSC|1|AAHuman mitochondrial ribosome in complex with E-site tRNAELECTRON MICROSCOPY3.5927
297OG4|1|AAHuman mitochondrial ribosome in complex with P/E-tRNAELECTRON MICROSCOPY3.8924
306ZS9|1|AAHuman mitochondrial ribosome in complex with ribosome recycling factorELECTRON MICROSCOPY4927
316ZSE|1|AAHuman mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNAELECTRON MICROSCOPY5927
329HFM|1|ATranslation-initiation state of human mitochondrial ribosome small subunit (State D)ELECTRON MICROSCOPY3896
339HFN|1|ATranslation-initiation state of human mitochondrial ribosome small subunit (State E)ELECTRON MICROSCOPY3.3896
349G5E|1|ATranslation-initiation state of human mitochondrial ribosome small subunit (State F)ELECTRON MICROSCOPY3.2896
359HFO|1|ATranslation-initiation state of human mitochondrial ribosome small subunit (State G)ELECTRON MICROSCOPY3.1909
367PO2|1|AInitiation complex of human mitochondrial ribosome small subunit with IF2, fMet-tRNAMet and mRNAELECTRON MICROSCOPY3.09955
377PO3|1|AHuman mitochondrial ribosome small subunitELECTRON MICROSCOPY2.92955
387PO1|1|AInitiation complex of human mitochondrial ribosome small subunit with IF3ELECTRON MICROSCOPY2.92955
398QRN|1|Amt-SSU in GTPBP8 knock-out cells, state 4ELECTRON MICROSCOPY2.98955
406RW5|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF2 and IF3ELECTRON MICROSCOPY3.14955
418QRM|1|Amt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3ELECTRON MICROSCOPY3.05955
427P2E|1|AHuman mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycinELECTRON MICROSCOPY2.4955
436RW4|1|AStructure of human mitochondrial 28S ribosome in complex with mitochondrial IF3ELECTRON MICROSCOPY2.97955
448QRK|1|Amt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1ELECTRON MICROSCOPY6.69955
457PNZ|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation cELECTRON MICROSCOPY3.09951
467PO0|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3ELECTRON MICROSCOPY2.9951
477PNX|1|AAssembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation aELECTRON MICROSCOPY2.76951
488QRL|1|Amt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2ELECTRON MICROSCOPY3.34951
499G5D|1|AAssembly intermediate of human mitochondrial ribosome small subunit (State C)ELECTRON MICROSCOPY3917
509G5B|1|AAssembly intermediate of human mitochondrial ribosome small subunit (State A)ELECTRON MICROSCOPY3.2816
519G5C|1|AAssembly intermediate of human mitochondrial ribosome small subunit (State B)ELECTRON MICROSCOPY3890
528CST|1|AHuman mitochondrial small subunit assembly intermediate (State E)ELECTRON MICROSCOPY2.85888
538CSS|1|AHuman mitochondrial small subunit assembly intermediate (State D)ELECTRON MICROSCOPY2.36846
548CSR|1|AHuman mitochondrial small subunit assembly intermediate (State C)ELECTRON MICROSCOPY2.54853
558CSU|1|AHuman mitochondrial small subunit assembly intermediate (State C*)ELECTRON MICROSCOPY3.03881
568CSQ|1|AHuman mitochondrial small subunit assembly intermediate (State B)ELECTRON MICROSCOPY2.54802
578CSP|1|AHuman mitochondrial small subunit assembly intermediate (State A)ELECTRON MICROSCOPY2.66737

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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