#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14XNR|1|X (rep)Purine riboswitchVibrio Vulnificus Adenine RiboswitchVibrio vulnificusBacteriaRF00167Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with AdenineX-ray diffraction2.212015-05-06
24TZY|1|XPurine riboswitchVibrio vulnificus Adenine RiboswitchVibrio vulnificusBacteriaRF00167Vibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+X-ray diffraction2.572014-09-10
34TZX|1|XPurine riboswitchVibrio vulnificus Adenine RiboswitchVibrio vulnificusBacteriaRF00167Vibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+X-ray diffraction2.012014-09-10
45UZA|1|XPurine riboswitchRNA (71-MER)Vibrio vulnificusBacteriaRF00167Adenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR)X-ray diffraction2.222018-02-28
56VWT|1|BPurine riboswitchadenine riboswitch aptamer variantVibrio vulnificusBacteriaRF00167Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand bindingX-ray diffraction3.032020-11-11
66VWT|1|APurine riboswitchadenine riboswitch aptamer variantVibrio vulnificusBacteriaRF00167Transitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand bindingX-ray diffraction3.032020-11-11
76VWV|1|BPurine riboswitchadenine riboswitch aptamer variantVibrio vulnificusBacteriaRF00167Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand bindingX-ray diffraction32020-11-11
86VWV|1|APurine riboswitchadenine riboswitch aptamer variantVibrio vulnificusBacteriaRF00167Transitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand bindingX-ray diffraction32020-11-11
95SWE|1|XPurine riboswitchVibrio vulnificus strain 93U204 chromosome II, adenine riboswitch aptamer domainVibrio vulnificusBacteriaRF00167Ligand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallographyX-ray diffraction32016-11-23

Release history

Release3.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.3603.3613.3623.3633.3643.365
Date2020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-062024-11-132024-11-202024-11-272024-12-042024-12-11

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_94683.1NR_all_59689.43.152(5) 4TZX|1|X, 4TZY|1|X, 4XNR|1|X, 5SWE|1|X, 5UZA|1|X(4) 6VWT|1|A, 6VWT|1|B, 6VWV|1|A, 6VWV|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15UZA|1|XAdenine riboswitch aptamer domain labelled with iodo-uridine by position-selective labelling of RNA (PLOR)X-RAY DIFFRACTION2.2269
24XNR|1|XVibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with AdenineX-RAY DIFFRACTION2.2171
34TZY|1|XVibrio vulnificus Adenine Riboswitch Variant, grown in both Sr2+ and Mg2+X-RAY DIFFRACTION2.5771
44TZX|1|XVibrio Vulnificus Adenine Riboswitch variant, grown in Mg2+X-RAY DIFFRACTION2.0171
55SWE|1|XLigand-bound structure of adenine riboswitch aptamer domain converted in crystal from its ligand-free state using ligand mixing serial femtosecond crystallographyX-RAY DIFFRACTION371
66VWT|1|BTransitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand bindingX-RAY DIFFRACTION3.0371
76VWT|1|ATransitional unit cell 1 of adenine riboswitch aptamer crystal phase transition upon ligand bindingX-RAY DIFFRACTION3.0371
86VWV|1|BTransitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand bindingX-RAY DIFFRACTION371
96VWV|1|ATransitional unit cell 2 of adenine riboswitch aptamer crystal phase transition upon ligand bindingX-RAY DIFFRACTION371

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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